FC931066

Overview
NameFC931066
Unique NameFC931066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: PSL1_HUMAN (Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.058e-24
Identity = 75/210 (35.71%), Postives = 118/210 (56.19%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVI----LFCIGGVEGLQTCLVALLSRW-FRRAGESFIKVPFFGAVSHLT-LAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 583
            V+LY     +F +LLV     +FC+    GL +CL   + R  F +       +P+F        L +  FC+A +VVW ++R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YDIF+VF++  L     S+M+ VA G  D +  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  238 VLLY-----YFYDLLVYVVIGIFCLASATGLYSCLAPCVRRLPFGKCRIPNNSLPYFHKRPQARMLLLALFCVAVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLYDIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 442          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: PSL2_HUMAN (Signal peptide peptidase-like 2A OS=Homo sapiens GN=SPPL2A PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.804e-24
Identity = 75/230 (32.61%), Postives = 128/230 (55.65%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGEDGIPMLLKIPRM--FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS*ILW*MPLVLLQ 664
            V+LY     W + +++ +FCI     L  CL AL+ +     G+  I          L + ++  CIA AVVWA++R    +AWI QDILGIA  + +++ + +PN K   +LL    +YD+F+VF++  +    ES+M+ +A G     + +P+++++P++  F          SI+GFGDI++PGL+IA+  RF +   SS+   +S+  + A    IL  + LVL++
Sbjct:  235 VLLY-FFYKWLVYVMIAIFCIASAMSLYNCLAALIHKI--PYGQCTIACRGKNMEVRL-IFLSGLCIAVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTLKLPNFKSCVILLGLLLLYDVFFVFITPFITKNGESIMVELAAGPFGNNEKLPVVIRVPKLIYFSVMSVCLMPVSILGFGDIIVPGLLIAYCRRFDVQTGSSYIYYVSSTVAYAIGM-ILTFVVLVLMK 459          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: PSL1_CHICK (Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.855e-24
Identity = 76/210 (36.19%), Postives = 123/210 (58.57%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFI---KVPFFGA---VSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 583
            V+LY    +  + +++ +FC+    GL +CL   + R+    G+  I    +P+F     V  L LAV  FCI+ +VVW ++R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YD+F+VF++  L    ES+M+ VA G  D +  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  234 VLLYFFYDH-LVYVIIGIFCLAASIGLYSCLSPFVRRF--PLGKCRIPDNNLPYFHKRPQVRILLLAV--FCISVSVVWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKGCTLLLLVLFVYDVFFVFITPFLTKTGESIMVEVAAGPSDSATHEKLPMVLKVPRLNSSPLALCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 438          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: PSL2_MOUSE (Signal peptide peptidase-like 2A OS=Mus musculus GN=Sppl2a PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.803e-23
Identity = 67/207 (32.37%), Postives = 114/207 (55.07%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGY----------SIIGFGDILLPGLIIAFSLRFKLSDLSS 583
            V+LY     W + +++ +FCI     L  CL AL+ R     G+  I          L + ++  CI+ AVVWA++R    +AWI QDILGIA  + +++ + +PN     +LL    +YD+F+VF++  +    ES+M+ +A G     + +P+++++P++     GY          S++GFGDI++PGL+IA+  RF +   SS
Sbjct:  239 VLLY-FFYRWLVYVMIAIFCIASSMSLYNCLSALIHRM--PCGQCTILCCGKNIKVSL-IFLSGLCISVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTMKLPNFMSCVILLGLLLIYDVFFVFITPFITKNGESIMVELAAGPFENAEKLPVVIRVPKLM----GYSVMSVCSVPVSVLGFGDIIVPGLLIAYCRRFDVQTGSS 437          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: PSL1_MOUSE (Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.579e-23
Identity = 70/206 (33.98%), Postives = 114/206 (55.34%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRW-FRRAGESFIKVPFFGAVSHLT-LAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 583
            V+LY       + +++ +FC+    GL +CL   + +  F         +P+F        L +  FC+  +VVW I+R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YDIF+VF++  L     S+M+ VA G  + S  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  231 VLLYYFYDR-LVYVIIGIFCLASSTGLYSCLAPFVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGIFRNEDQWAWVLQDTLGIAFCLYMLKTIRLPTFKACTLLLLVLFIYDIFFVFITPFLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 435          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: PSL1_RAT (Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23
Identity = 69/206 (33.50%), Postives = 114/206 (55.34%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRW-FRRAGESFIKVPFFGAVSHLT-LAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARG--DKSGEDGIPMLLKIPRM-FDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSS 583
            V+LY       + +++ +FC+    GL +CL   + +  F         +P+F        L +  FC+  +VVW ++R    +AW+ QD LGIA  + +L+ + +P  K  T+LL   F+YDIF+VF++  L     S+M+ VA G  + S  + +PM+LK+PR+   P       +S++GFGDIL+PGL++A+  RF +   SS
Sbjct:  231 VLLYYFYDR-LVYVIIGIFCLASSTGLYSCLAPCVRKLPFCTCRVPDNNLPYFHKRPQARMLLLALFCVTVSVVWGVFRNEDQWAWVLQDTLGIAFCLYMLRTIRLPTFKACTLLLLVLFVYDIFFVFITPYLTKSGNSIMVEVATGPSNSSTHEKLPMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSS 435          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: IMP5_MOUSE (Signal peptide peptidase-like 2C OS=Mus musculus GN=Sppl2c PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.671e-19
Identity = 65/207 (31.40%), Postives = 108/207 (52.17%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLS-------RWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLF---HESVMIVVARG--DKSGEDGIPMLLKIPRM-FDPW----GGYSIIGFGDILLPGLIIAFSLRFKL 568
            ++LY    + F+ +++ +F +G   GL +CL  +L        +W        +  P         L +   C    V+W I+R    +AW+ QD LG+A  + VL+ V +P  K  T+ L     +D+F+VF++  LF    ES+M+ VA G  D S  + +PM+LK+PR+ F         +SI+GFGDI++PG ++A+  RF +
Sbjct:  277 ILLY-FFYDCFVYVMIGIFSLGASTGLYSCLAPILCHLPLWRYQWVLPGQRVSVTWPL--------LLLAGLCAMVTVLWVIHRNEDHWAWLLQDTLGVAYCLFVLRRVRLPTFKNCTLFLLALLAFDVFFVFIT-PLFTKTGESIMVEVASGPADSSSHERLPMVLKVPRLSFSALTLCNQPFSILGFGDIVVPGFLVAYCHRFDM 473          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: IMP5_HUMAN (Signal peptide peptidase-like 2C OS=Homo sapiens GN=SPPL2C PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 8.116e-17
Identity = 68/237 (28.69%), Postives = 118/237 (49.79%), Query Frame = 2
Query:    2 VMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVP--FFGAVSHLTLAVTPFCIAFAVVWAIYRKVS-FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARG--DKSGEDGIPMLLKIPRM--------FDPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISALYSQAFTS*ILW*MPLVLLQI 667
            ++L     + F+ + + +F +G   GL +CL  L+ R   R    + + P   + ++    L +   C    + W  YR    +AW+ QD LGI+  + VL  V +P LK  +  L     +D+F+VFV+       ES+M  VA G  + S  + +PM+LK+PR+          P   +SI+GFGDI++PG ++A+  RF +   S     ++   + A    + + M +VL+Q+
Sbjct:  267 MLLLYFFYDHFVYVTIGIFGLGAGIGLYSCLSPLVCRLSLR---QYQRPPHSLWASLPLPLLLLASLCATVIIFWVAYRNEDRWAWLLQDTLGISYCLFVLHRVRLPTLKNCSSFLLALLAFDVFFVFVTPFFTKTGESIMAQVALGPAESSSHERLPMVLKVPRLRVSALTLCSQP---FSILGFGDIVVPGFLVAYCCRFDVQVCSRQIYFVACTVAYAVGLLVTF-MAMVLMQM 496          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 42/129 (32.56%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  215 VWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFDPWG----GYSIIGFGDILLPGLIIAFSLRFKLSDLSSHH 589
            VW + RK    WI  ++ G+A  +  ++++H+ N+  G +LL   F+YDIFWVF +      +VM+ VA+  ++     P+ L  P+     G     ++++G GDI++PG+ IA  LRF +S   + H
Sbjct:  174 VWYLLRK---HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDIFWVFGT------NVMVTVAKSFEA-----PIKLVFPQDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTH 288          
BLAST of FC931066 vs. ExPASy Swiss-Prot
Match: PSL4_HUMAN (Signal peptide peptidase-like 3 OS=Homo sapiens GN=SPPL3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 46/155 (29.68%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  155 FGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVAR----------------GDKSGEDGIPMLLKIPRMFDP---WGGYSIIGFGDILLPGLIIAFSLRF 562
            FG     T A      + +V+  +   ++  W+  D L + L + ++  V +P+LKV  +LLS   +YD+FWVF S  +F+ +VM+ VA                 G   G D +P L    ++  P      +S++G GDI++PGL++ F LR+
Sbjct:  134 FGCCGRFTAAEL-LSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRD-VPRLSLPGKLVFPSSTGSHFSMLGIGDIVMPGLLLCFVLRY 286          
The following BLAST results are available for this feature:
BLAST of FC931066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PSL1_HUMAN1.058e-2435.71Signal peptide peptidase-like 2B OS=Homo sapiens G... [more]
PSL2_HUMAN1.804e-2432.61Signal peptide peptidase-like 2A OS=Homo sapiens G... [more]
PSL1_CHICK6.855e-2436.19Signal peptide peptidase-like 2B OS=Gallus gallus ... [more]
PSL2_MOUSE5.803e-2332.37Signal peptide peptidase-like 2A OS=Mus musculus G... [more]
PSL1_MOUSE7.579e-2333.98Signal peptide peptidase-like 2B OS=Mus musculus G... [more]
PSL1_RAT9.898e-2333.50Signal peptide peptidase-like 2B OS=Rattus norvegi... [more]
IMP5_MOUSE8.671e-1931.40Signal peptide peptidase-like 2C OS=Mus musculus G... [more]
IMP5_HUMAN8.116e-1728.69Signal peptide peptidase-like 2C OS=Homo sapiens G... [more]
HM13_MOUSE2.702e-1232.56Minor histocompatibility antigen H13 OS=Mus muscul... [more]
PSL4_HUMAN3.529e-1229.68Signal peptide peptidase-like 3 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34101A09EF PostHarvP1 Citrus clementina cDNA clone C34101A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931066 ID=FC931066; Name=FC931066; organism=Citrus clementina; type=EST; length=716bp
GGTCATGCTTTACAAACTTATGTCAAACTGGTTCCTTGAGCTATTGGTCA
TTCTTTTCTGCATAGGTGGTGTAGAGGGCTTGCAAACTTGCTTGGTTGCT
TTATTATCAAGGTGGTTCAGACGTGCTGGAGAATCATTCATCAAAGTACC
TTTCTTTGGAGCTGTCTCTCATCTTACTTTGGCTGTTACTCCATTCTGCA
TAGCATTTGCTGTTGTGTGGGCCATTTATCGCAAGGTCTCCTTTGCATGG
ATCGGTCAAGATATTCTTGGAATTGCGCTGATAATAACAGTCCTGCAAAT
TGTCCATATTCCTAATCTCAAGGTGGGTACAGTTCTTCTCAGCTGTGCCT
TCATGTACGACATCTTTTGGGTATTTGTTTCCAAGAAGTTGTTTCATGAA
AGTGTGATGATTGTGGTGGCACGTGGCGATAAAAGTGGTGAGGATGGTAT
CCCAATGCTATTGAAGATTCCTCGCATGTTTGACCCATGGGGCGGTTACA
GCATCATCGGTTTTGGTGATATTCTTTTACCTGGATTGATTATAGCATTT
TCACTCAGGTTCAAGCTCTCTGACCTTTCCTCACACCACATCCCTATTAG
TGCTTTGTACTCGCAAGCTTTTACTTCCTAAATACTTTGGTGAATGCCTC
TGGTATTATTGCAAATATTTTTCATCCCACTGGATATATGCTTTCCAGCG
AGTGAATTCTTAAACT
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