FC931129

Overview
NameFC931129
Unique NameFC931129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931129_ssr119 microsatellite FC931129_ssr119:119..130. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931129_ssr179 microsatellite FC931129_ssr179:179..190. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15280 contig Ccv1_Contig15280:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.709e-74
Identity = 141/186 (75.81%), Postives = 154/186 (82.80%), Query Frame = 3
Query:  117 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            LKK+KR                      RKLI+ R +QY+KEY E++KELI LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYG+PNLKSVKELIYKRGYGKLN QRIALTDNSI+EQALG+HGIIC EDLIHEILTVG   +EA
Sbjct:   13 LKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEA 198          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.485e-73
Identity = 138/186 (74.19%), Postives = 155/186 (83.33%), Query Frame = 3
Query:  117 LKKKKRXXXXXXXXXXXXXXXXXXXXXTRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            LKK+KR                      RKLI+NR KQY+KEY E+++ELI+LKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRG+GKLN QR ALTDNSI++Q LG+HGIIC+EDLIHEI+TVG   +EA
Sbjct:   15 LKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEA 200          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.940e-73
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            RKLI+ R +QYAKEY E+  ELIRLKREAKLKGGFYV+PEAKLLFIIRIRGINA+DPKTKKILQLLRLRQIFNGVFLKVNKAT+NML RVEPYVTYGYPNLKSVKELIYKRGYGKLN QRIALTDNSI++QALG+HGIIC+EDLIHEI+TVG   +EA
Sbjct:   41 RKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEA 198          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55
Identity = 104/158 (65.82%), Postives = 127/158 (80.38%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG   +EA
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEA 203          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55
Identity = 105/158 (66.46%), Postives = 126/158 (79.75%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS+I ++LG+ GIICMEDLIHEI TVG   +EA
Sbjct:   69 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEA 226          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55
Identity = 104/158 (65.82%), Postives = 127/158 (80.38%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG   +EA
Sbjct:   46 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEA 203          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55
Identity = 104/158 (65.82%), Postives = 127/158 (80.38%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG   +EA
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEA 204          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55
Identity = 104/158 (65.82%), Postives = 127/158 (80.38%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDN++I ++LG++GIICMEDLIHEI TVG   +EA
Sbjct:   47 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEA 204          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.064e-55
Identity = 104/158 (65.82%), Postives = 126/158 (79.75%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEA 674
            RKLIY + K Y KEY +  +  IR+ R A+  G FYV  E KL F+IRIRGIN V PK +K+LQLLRLRQIFNG F+K+NKA++NML  VEPY+ +GYPNLKSV ELIYKRGYGK+NK+RIALTDNS++ ++LG+ GIICMEDLIHEI TVG   +EA
Sbjct:   59 RKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASVNMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEA 216          
BLAST of FC931129 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.634e-54
Identity = 103/159 (64.78%), Postives = 130/159 (81.76%), Query Frame = 3
Query:  201 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGXSLQEAT 677
            R +I+ R + Y KEY + ++E IRL+R AK  G F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSVKELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMEDLIHEI TVG + ++A+
Sbjct:   46 RAVIFKRAETYVKEYRDVEREKIRLQRAAKQDGSFHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQAS 204          
The following BLAST results are available for this feature:
BLAST of FC931129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL72_ARATH8.709e-7475.8160S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH1.485e-7374.1960S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL73_ARATH1.940e-7386.0860S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_PONAB2.383e-5565.8260S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE2.383e-5566.4660S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA2.383e-5565.8260S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN2.383e-5565.8260S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN2.383e-5565.8260S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_RAT4.064e-5565.8260S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_NEUCR2.634e-5464.7860S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC34101G08EF PostHarvP1 Citrus clementina cDNA clone C34101G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931129 ID=FC931129; Name=FC931129; organism=Citrus clementina; type=EST; length=685bp
AAGGAGCCGCGAATCCCGAACGCCTCCGTGAAGAAGATAGATCTAAAAGA
CCTCTAGGAACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGT
GGTACCAGAGTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCAT
TGGCCAAGAAGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACC
CGGAAGCTCATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGA
AGAGCAAAAAGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTG
GATTTTATGTCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGC
GGTATCAATGCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCG
TTTGAGACAGATTTTTAATGGTGTTTTTTTGAAAGTGAACAAAGCCACAC
TCAATATGCTGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAAT
TTAAAGAGTGTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAA
TAAGCAGAGGATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTG
GGCAGCATGGAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACT
GTTGGTNCCTCACTTCAGGAGGCAACACTTCCTAT
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