FC931202

Overview
NameFC931202
Unique NameFC931202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15289 contig Ccv1_Contig15289:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_DICDI (Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.880e-15
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686
            ++V+D   F+ N +  ++YLYDILTN +V +KKIPVL+  NK D  +    E ++  +E+E+D LR
Sbjct:  159 IYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLVFNNKMDLDSTIDTEQVKNILERELDDLR 224          

HSP 2 Score: 40.817 bits (94), Expect = 5.880e-15
Identity = 24/84 (28.57%), Postives = 41/84 (48.81%), Query Frame = 2
Query:  242 KKSNTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGII 493
            K+   I + GLS +GKT L   L +      T TS+  N   ++  ++       K + ++DVPG+ + +  L + L  +A II
Sbjct:   83 KRGVNIAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYITENK-------KKLPIIDVPGNGKAKASLPKILSNSACII 159          
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_MOUSE (Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.790e-14
Identity = 25/66 (37.88%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686
            +FVVD+  F       +E+LY +L +S  +K    +LI CNK D   A + + I++Q+EKE++ LR
Sbjct:  138 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR 203          

HSP 2 Score: 46.2098 bits (108), Expect = 4.790e-14
Identity = 37/117 (31.62%), Postives = 57/117 (48.72%), Query Frame = 2
Query:  149 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSNTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAAGII 493
            + Q  PT L +A A+            ++ RK S   VL  GL  SGKT+LF +L  G  ++ T TS+    D+  ++  +  +G    + L+D+PGH  LR   LD F   A  ++
Sbjct:   28 LQQRDPTLLSVAVALLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT---DSSAIYKVNNNRGN--SLTLIDLPGHESLRFQLLDRFKSSARAVV 138          
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_RAT (Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 4.790e-14
Identity = 24/66 (36.36%), Postives = 39/66 (59.09%), Query Frame = 3
Query:  489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686
            +FVVD+  F       +E+LY +L +S  +K     L+ CNK D   A + + I++Q+EKE++ LR
Sbjct:  138 VFVVDSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNTLR 203          

HSP 2 Score: 47.7506 bits (112), Expect = 4.790e-14
Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 2
Query:  149 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSNTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGII 493
            + Q  PT L +A AV            ++ RK S   VL  GL  SGKT+LF +L  G  ++ T TS+    D+  ++  +  +G    + L+D+PGH  LR + LD F   A  ++
Sbjct:   28 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT---DSSAIYKVNNNRGN--SLTLIDLPGHESLRLQFLDRFKSSARAVV 138          
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_HUMAN (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3)

HSP 1 Score: 50.0618 bits (118), Expect = 1.435e-12
Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 3
Query:  489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686
            +FVVD+  F       +E+LY +L +S  +K     LI CNK D   A + + I++Q+EKE++ LR
Sbjct:  140 VFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLR 205          

HSP 2 Score: 43.5134 bits (101), Expect = 1.435e-12
Identity = 35/117 (29.91%), Postives = 56/117 (47.86%), Query Frame = 2
Query:  149 INQIPPTQLYIACAVXXXXXXXXXXXQV-FRRKKSNTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGII 493
            + Q  PT L +  AV            +  RR     ++L GL  SGKT+LF +L  G  ++ T TS+    D+  ++  +  +G    + L+D+PGH  LR + L+ F   A  I+
Sbjct:   30 LQQTDPTLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTG-LYRDTQTSIT---DSCAVYRVNNNRGN--SLTLIDLPGHESLRLQFLERFKSSARAIV 140          
The following BLAST results are available for this feature:
BLAST of FC931202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SRPRB_DICDI5.880e-1542.42Signal recognition particle receptor subunit beta ... [more]
SRPRB_MOUSE4.790e-1437.88Signal recognition particle receptor subunit beta ... [more]
SRPRB_RAT4.790e-1436.36Signal recognition particle receptor subunit beta ... [more]
SRPRB_HUMAN1.435e-1237.88Signal recognition particle receptor subunit beta ... [more]
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Properties
Property NameValue
Genbank descriptionC34102F01EF PostHarvP1 Citrus clementina cDNA clone C34102F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931202 ID=FC931202; Name=FC931202; organism=Citrus clementina; type=EST; length=691bp
GAGACAGACAAGTAAGTGCGTAGGATTTTGAATCTGTAAGTGTGACGAAG
CGTTGCGTATATTATCGTTCGTAATGTGGAAGTTACCAGAAGGGATGGAA
CAGTGGAAGAAGGATTTAGAGGAGTGGTTGAATCGTGGAATTGAATTTAT
CAACCAAATTCCCCCAACTCAGCTCTACATCGCTTGCGCCGTTTTGCTCC
TAACCACCGCTCTTCTCTTACTACTTCAAGTGTTCAGACGCAAGAAATCT
AATACCATTGTACTTGCTGGCTTAAGCGGGAGTGGGAAAACTGTTCTGTT
CTATCAACTTCGGGATGGTTCGACCCACCAGGGTACTGTTACATCAATGG
AACCAAATGAGGACACTTTTGTGCTACATTCTGAAAGCACTAAGAAGGGG
AAAATAAAGCCTGTTCACCTTGTTGATGTTCCTGGTCATTCTCGTCTCCG
ACCCAAACTAGATGAGTTTTTGCCTCAAGCAGCTGGCATTATTCGTTGTG
GATGCCTTGGAATTCCTACCAAACTGTTCTGCAGCTTCTGAGTACCTGTA
TGATATTTTAACAAACTCAACTGTTGTCAAAAAGAAAATTCCAGTTCTCA
TCTGTTGTAACAAGACAGACAAAGTGACGGCCCACACCAAGGAGTTCATT
CGGAAGCAAATGGAGAAGGAAATCGACNAGTTGCGAGCATC
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