FC931202
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_DICDI (Signal recognition particle receptor subunit beta OS=Dictyostelium discoideum GN=srprb PE=3 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 5.880e-15 Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 3 Query: 489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686 ++V+D F+ N + ++YLYDILTN +V +KKIPVL+ NK D + E ++ +E+E+D LR Sbjct: 159 IYVIDGTTFIDNSTQEAQYLYDILTNESVYQKKIPVLVFNNKMDLDSTIDTEQVKNILERELDDLR 224 HSP 2 Score: 40.817 bits (94), Expect = 5.880e-15 Identity = 24/84 (28.57%), Postives = 41/84 (48.81%), Query Frame = 2 Query: 242 KKSNTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPKLDEFLPQAAGII 493 K+ I + GLS +GKT L L + T TS+ N ++ ++ K + ++DVPG+ + + L + L +A II Sbjct: 83 KRGVNIAILGLSNAGKTALLLNLTNVDKKISTHTSITTNNGVYITENK-------KKLPIIDVPGNGKAKASLPKILSNSACII 159
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_MOUSE (Signal recognition particle receptor subunit beta OS=Mus musculus GN=Srprb PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 4.790e-14 Identity = 25/66 (37.88%), Postives = 40/66 (60.61%), Query Frame = 3 Query: 489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686 +FVVD+ F +E+LY +L +S +K +LI CNK D A + + I++Q+EKE++ LR Sbjct: 138 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLR 203 HSP 2 Score: 46.2098 bits (108), Expect = 4.790e-14 Identity = 37/117 (31.62%), Postives = 57/117 (48.72%), Query Frame = 2 Query: 149 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSNTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLR-PKLDEFLPQAAGII 493 + Q PT L +A A+ ++ RK S VL GL SGKT+LF +L G ++ T TS+ D+ ++ + +G + L+D+PGH LR LD F A ++ Sbjct: 28 LQQRDPTLLSVAVALLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT---DSSAIYKVNNNRGN--SLTLIDLPGHESLRFQLLDRFKSSARAVV 138
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_RAT (Signal recognition particle receptor subunit beta OS=Rattus norvegicus GN=Srprb PE=2 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 4.790e-14 Identity = 24/66 (36.36%), Postives = 39/66 (59.09%), Query Frame = 3 Query: 489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686 +FVVD+ F +E+LY +L +S +K L+ CNK D A + + I++Q+EKE++ LR Sbjct: 138 VFVVDSATFQREVKDVAEFLYQVLIDSMALKNTPAFLVACNKQDIAMAKSAKLIQQQLEKELNTLR 203 HSP 2 Score: 47.7506 bits (112), Expect = 4.790e-14 Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 2 Query: 149 INQIPPTQLYIACAVXXXXXXXXXXXQVFRRKKSNTIVL-AGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGII 493 + Q PT L +A AV ++ RK S VL GL SGKT+LF +L G ++ T TS+ D+ ++ + +G + L+D+PGH LR + LD F A ++ Sbjct: 28 LQQRDPTLLSVAVAVLAVLLTLVFWKFIWSRKSSQRAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSIT---DSSAIYKVNNNRGN--SLTLIDLPGHESLRLQFLDRFKSSARAVV 138
BLAST of FC931202 vs. ExPASy Swiss-Prot
Match: SRPRB_HUMAN (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3) HSP 1 Score: 50.0618 bits (118), Expect = 1.435e-12 Identity = 25/66 (37.88%), Postives = 39/66 (59.09%), Query Frame = 3 Query: 489 LFVVDALEFLPNCSAASEYLYDILTNSTVVKKKIPVLICCNKTDKVTAHTKEFIRKQMEKEIDXLR 686 +FVVD+ F +E+LY +L +S +K LI CNK D A + + I++Q+EKE++ LR Sbjct: 140 VFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLR 205 HSP 2 Score: 43.5134 bits (101), Expect = 1.435e-12 Identity = 35/117 (29.91%), Postives = 56/117 (47.86%), Query Frame = 2 Query: 149 INQIPPTQLYIACAVXXXXXXXXXXXQV-FRRKKSNTIVLAGLSGSGKTVLFYQLRDGSTHQGTVTSMEPNEDTFVLHSESTKKGKIKPVHLVDVPGHSRLRPK-LDEFLPQAAGII 493 + Q PT L + AV + RR ++L GL SGKT+LF +L G ++ T TS+ D+ ++ + +G + L+D+PGH LR + L+ F A I+ Sbjct: 30 LQQTDPTLLSVVVAVLAVLLTLVFWKLIRSRRSSQRAVLLVGLCDSGKTLLFVRLLTG-LYRDTQTSIT---DSCAVYRVNNNRGN--SLTLIDLPGHESLRLQFLERFKSSARAIV 140 The following BLAST results are available for this feature:
BLAST of FC931202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931202 ID=FC931202; Name=FC931202; organism=Citrus clementina; type=EST; length=691bpback to top |