FC931209
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.017e-57 Identity = 127/203 (62.56%), Postives = 143/203 (70.44%), Query Frame = 2 Query: 95 MARLLAQLTNAPALVPGGRHFQSQNAGRSRRNVKMMSYMQPSASRISSFSGLRRSNALDTFT---CDFHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 MAR+LAQ + P LV G + Q + +G+S+R+VK M ++ S R+S FSGLR N L+T DFHS V+ F+ +AMFERFTEKAIK+IMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELS EEARQLGHNYIGSEHLLL Sbjct: 1 MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNTMMRPGLDFHSKVS---KAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLL 200
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55 Identity = 121/200 (60.50%), Postives = 136/200 (68.00%), Query Frame = 2 Query: 95 MARLLAQLTNAPALVPGGRHFQSQNAGRSRRNVKMMSYMQPSASRISSFSGLRRSNALDTFTCDFHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 MAR L Q T+ P+ V G R + +G+++R V M+ Q S+ + F+GLR NA+DT + + FV KAMFERFTEKAIK+IMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL Sbjct: 1 MARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDTLVRSGETLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 200
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 7.176e-55 Identity = 125/205 (60.98%), Postives = 140/205 (68.29%), Query Frame = 2 Query: 92 IMARLLAQLTNAPALVPGGRHFQSQNAGRSRRNVKMMSYMQPSASRISSFSGLRRSNALDTFTCD----FHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 +MAR L Q TN V G R Q + + +R V+M+ ++ +SR+++F+GLR NALDT HS VA FV KAMFERFTEKAIK+IMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGF+AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL Sbjct: 1 MMARALVQSTNILPSVAGERAGQFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNALDTLLVKSGETLHSKVAAATFVRRPRGCR---FVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFIAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 202
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.022e-45 Identity = 97/114 (85.09%), Postives = 98/114 (85.96%), Query Frame = 2 Query: 353 VVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 VVKAMFERFTEKAIK+IMLAQEEARRLGHNFV AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL Sbjct: 37 VVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 150
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 8.229e-43 Identity = 91/110 (82.73%), Postives = 94/110 (85.45%), Query Frame = 2 Query: 365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 MFERFTEKAIK+IMLAQEEARRLGHNFV AAKVLKSMG+NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+EHLLL Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLL 110
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41 Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 2 Query: 365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 MFERFTEKAIK+IMLAQEEARRLGHNFV AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+EHLL+ Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLM 110
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41 Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 2 Query: 365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 MFERFTEKAIK+IMLAQEEARRLGHNFV AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+EHLL+ Sbjct: 1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLM 110
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38 Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 2 Query: 359 KAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 K MFERFTEKA+K+IMLAQEEARRLGHNFV AAK LKSMGI LKDAR+EVEKIIGRGSGFVA+EIPFTPRAK++LEL++EE+R L HNY+G+EHLLL Sbjct: 30 KNMFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFVAIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLL 141
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28 Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 2 Query: 365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 MFE+FTE AIK+IML+QEEARR+GHNFV A+ LK + LK AR E+E IGRG+GFVA EIPFTPRAKRVLE+++ E + LG N++G+EH+LL Sbjct: 1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGIGARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNFVGTEHILL 110
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26 Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 2 Query: 365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694 MFERFT++A ++++LAQEEAR L HN++ AAK L+S+GI+L+ R +VE+IIG+G + IPFTPRAK+VLELSL EA QLGHNYIG+EH+LL Sbjct: 1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILL 110 The following BLAST results are available for this feature:
BLAST of FC931209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931209 ID=FC931209; Name=FC931209; organism=Citrus clementina; type=EST; length=695bpback to top |