FC931209

Overview
NameFC931209
Unique NameFC931209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.017e-57
Identity = 127/203 (62.56%), Postives = 143/203 (70.44%), Query Frame = 2
Query:   95 MARLLAQLTNAPALVPGGRHFQSQNAGRSRRNVKMMSYMQPSASRISSFSGLRRSNALDTFT---CDFHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MAR+LAQ  + P LV G +  Q + +G+S+R+VK M  ++ S  R+S FSGLR  N L+T      DFHS V+               F+ +AMFERFTEKAIK+IMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELS EEARQLGHNYIGSEHLLL
Sbjct:    1 MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNTMMRPGLDFHSKVS---KAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLL 200          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 121/200 (60.50%), Postives = 136/200 (68.00%), Query Frame = 2
Query:   95 MARLLAQLTNAPALVPGGRHFQSQNAGRSRRNVKMMSYMQPSASRISSFSGLRRSNALDTFTCDFHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MAR L Q T+ P+ V G R  +   +G+++R V M+   Q S+  +  F+GLR  NA+DT      +  +               FV KAMFERFTEKAIK+IMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL
Sbjct:    1 MARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDTLVRSGETLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 200          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.176e-55
Identity = 125/205 (60.98%), Postives = 140/205 (68.29%), Query Frame = 2
Query:   92 IMARLLAQLTNAPALVPGGRHFQSQNAGRSRRNVKMMSYMQPSASRISSFSGLRRSNALDTFTCD----FHSTVAVXXXXXXXXXXXXXXFVVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            +MAR L Q TN    V G R  Q   + + +R V+M+  ++  +SR+++F+GLR  NALDT         HS VA               FV KAMFERFTEKAIK+IMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGF+AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL
Sbjct:    1 MMARALVQSTNILPSVAGERAGQFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNALDTLLVKSGETLHSKVAAATFVRRPRGCR---FVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFIAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 202          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.022e-45
Identity = 97/114 (85.09%), Postives = 98/114 (85.96%), Query Frame = 2
Query:  353 VVKAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            VVKAMFERFTEKAIK+IMLAQEEARRLGHNFV                AAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL
Sbjct:   37 VVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 150          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.229e-43
Identity = 91/110 (82.73%), Postives = 94/110 (85.45%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFERFTEKAIK+IMLAQEEARRLGHNFV                AAKVLKSMG+NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+EHLLL
Sbjct:    1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFERFTEKAIK+IMLAQEEARRLGHNFV                AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+EHLL+
Sbjct:    1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLM 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.027e-41
Identity = 88/110 (80.00%), Postives = 93/110 (84.55%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFERFTEKAIK+IMLAQEEARRLGHNFV                AA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+EHLL+
Sbjct:    1 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLM 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 2
Query:  359 KAMFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            K MFERFTEKA+K+IMLAQEEARRLGHNFV                AAK LKSMGI LKDAR+EVEKIIGRGSGFVA+EIPFTPRAK++LEL++EE+R L HNY+G+EHLLL
Sbjct:   30 KNMFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFVAIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLL 141          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.570e-28
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFE+FTE AIK+IML+QEEARR+GHNFV                 A+ LK   + LK AR E+E  IGRG+GFVA EIPFTPRAKRVLE+++ E + LG N++G+EH+LL
Sbjct:    1 MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGIGARALKKQKVTLKKARREIELYIGRGTGFVASEIPFTPRAKRVLEMAVHEGKDLGQNFVGTEHILL 110          
BLAST of FC931209 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.103e-26
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 2
Query:  365 MFERFTEKAIKLIMLAQEEARRLGHNFVXXXXXXXXXXXXXXXXAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL 694
            MFERFT++A ++++LAQEEAR L HN++                AAK L+S+GI+L+  R +VE+IIG+G    +  IPFTPRAK+VLELSL EA QLGHNYIG+EH+LL
Sbjct:    1 MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILL 110          
The following BLAST results are available for this feature:
BLAST of FC931209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CLPC_PEA2.017e-5762.56ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC4.207e-5560.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC7.176e-5560.98ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA3.022e-4585.09ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH8.229e-4382.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE2.027e-4180.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU2.027e-4180.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA2.097e-3871.43ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_ODOSI2.570e-2856.36ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCTU4.103e-2654.55Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionC34102F08EF PostHarvP1 Citrus clementina cDNA clone C34102F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931209 ID=FC931209; Name=FC931209; organism=Citrus clementina; type=EST; length=695bp
GATATTTTTTTGCCCTTTTTCTCTTTTCTCTTTTAATTTTTATTTATCAA
AGCAAACGCCTTTGCTTTTTTCTCTCTAATATCTAGATTAAATCATGGCT
AGGCTTCTGGCTCAGTTAACTAATGCCCCTGCTTTGGTTCCTGGCGGAAG
ACATTTCCAGTCCCAAAATGCTGGAAGATCAAGAAGGAATGTCAAAATGA
TGTCTTATATGCAGCCGTCTGCTTCAAGAATTAGTAGTTTCTCAGGATTG
CGACGCTCCAATGCTTTAGATACATTCACCTGTGATTTCCATTCCACGGT
GGCTGTTTCACTCTCTTCTAGACGAGGAAAGTCTGGAAGAGCTGGTGGAT
TTGTTGTTAAAGCCATGTTTGAGCGCTTCACAGAGAAAGCAATTAAACTG
ATTATGCTTGCCCAAGAGGAAGCAAGACGGCTTGGCCACAATTTTGTTGG
CACGGAGCAAATTCTATTGGGTCTTATTGGTGAAGGCACTGGCATTGCTG
CTAAGGTTCTTAAATCAATGGGAATCAATCTTAAAGATGCACGTGTAGAA
GTGGAGAAGATTATTGGAAGGGGAAGTGGTTTTGTTGCTGTGGAAATTCC
GTTCACTCCTCGTGCAAAGCGTGTCTTGGAGCTTTCTCTGGAGGAAGCCC
GCCAGCTGGGCCATAATTATATTGGGTCCGAGCATCTTCTCCTTG
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