FC931211

Overview
NameFC931211
Unique NameFC931211
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931211 vs. ExPASy Swiss-Prot
Match: PCKA_CUCSA (Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 6.729e-51
Identity = 113/208 (54.33%), Postives = 135/208 (64.90%), Query Frame = 1
Query:   76 EMAENGEFSFTSRARS-TGRNGLPRIQT--NNKNKETLVCHDDSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPSTHSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETT 690
            E  +NGEFSF S   + TGR GLP+I T  N    E  +CHDDS TP++A+T++ LHSLQKKRSTP+TP+       T   G F+ +S                   TRETGPK+VKGDP   ++          H+   P    N+SDSALK TH+LYN SPAELYEQA+KYEKGSFITS+GALATLSGAKTGRSP DKRVVKD+TT
Sbjct:    4 EGKDNGEFSFVSDGGAETGRRGLPKIHTEKNAPTTERDICHDDSTTPMRARTLEHLHSLQKKRSTPTTPL-------TDSQGVFSPVSEAERQKQQLISISASLASLTRETGPKLVKGDPEKKKEAHKASVLDHLHF-GEPIL--NLSDSALKSTHILYNPSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPIDKRVVKDDTT 201          

HSP 2 Score: 23.483 bits (49), Expect = 6.729e-51
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  690 ERELWWGK 713
            E+ELWWGK
Sbjct:  202 EKELWWGK 209          
BLAST of FC931211 vs. ExPASy Swiss-Prot
Match: PCKA_ARATH (Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.906e-47
Identity = 104/187 (55.61%), Postives = 123/187 (65.78%), Query Frame = 1
Query:  139 LPRIQTNNKNKETLVCHDDSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPS---THSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETT 690
            +P+I T    + + VCHDDS   + A TIDELHSLQKKRS P+TPI    A A      FA +S                   TRE+GPKVV+GDPA  +K DG  +    H  H++        +SDS+LKFTHVLYNLSPAELYEQA+KYEKGSFITS+GALATLSGAKTGR+PRDKRVV+D TT
Sbjct:   23 MPKITTGAAKRGSGVCHDDSGPTVNATTIDELHSLQKKRSAPTTPINQNAAAA------FAAVSEEERQKIQLQSISASLASLTRESGPKVVRGDPAE-KKTDGSTTPAYAHGQHHSIFSPATGAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSNGALATLSGAKTGRAPRDKRVVRDATT 202          

HSP 2 Score: 21.9422 bits (45), Expect = 1.906e-47
Identity = 7/8 (87.50%), Postives = 7/8 (87.50%), Query Frame = 3
Query:  690 ERELWWGK 713
            E ELWWGK
Sbjct:  203 EDELWWGK 210          
BLAST of FC931211 vs. ExPASy Swiss-Prot
Match: PCKA_MAIZE (Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.190e-46
Identity = 112/196 (57.14%), Postives = 129/196 (65.82%), Query Frame = 1
Query:  133 NGLPRIQTNNKNKETL-VCHDDSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATAT--APDGSFAV-ISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKV--DGQPSTHSFH----YTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETT 690
            NGL RI+T  K K+   V +DDS+ P++A+TIDELHSLQ+KRS P+TP +S   T         FAV IS                   TRETGPKVVKGDPA   +    G PST   H    + + P     +SDS+LKFTHVL NLSPAELYEQA+KYEKGSFITS+GALATLSGAKTGRSPRDKRVVKDE T
Sbjct:    5 NGLARIETTGKKKQDNGVWYDDSSAPVRAQTIDELHSLQRKRSAPTTPNRSAPTTPIKGGAHSPFAVAISEEERHTQQMQSISASLASLTRETGPKVVKGDPAAKGEAAAQGAPSTPRAHQQHRHPAAPAIA--VSDSSLKFTHVLNNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRVVKDEVT 198          
BLAST of FC931211 vs. ExPASy Swiss-Prot
Match: PCKA2_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Urochloa panicoides GN=PCK2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.358e-35
Identity = 89/170 (52.35%), Postives = 104/170 (61.18%), Query Frame = 1
Query:  187 HD-DSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPSTHSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETTN 693
            HD DSA P+ A+TI+ELHSLQ+K +T +    SPL + +A   S A                       RE GP +VKGDP   +     P  H     +  T     SDS+LKFTHVLYNLSPAELYEQA   +K SFITS+GALATLSGAKTGRSPRDKRVVKDETT+
Sbjct:   14 HDSDSAAPVNAQTIEELHSLQRKAATTTKDGASPLQSISASLASLA-----------------------REYGPNLVKGDPEATKGAPPVPIKHQQPSAAAATIA--ASDSSLKFTHVLYNLSPAELYEQAFGQKKSSFITSTGALATLSGAKTGRSPRDKRVVKDETTS 158          

HSP 2 Score: 21.1718 bits (43), Expect = 8.358e-35
Identity = 6/7 (85.71%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  693 RELWWGK 713
            +ELWWGK
Sbjct:  159 QELWWGK 165          
BLAST of FC931211 vs. ExPASy Swiss-Prot
Match: PCKA1_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Urochloa panicoides GN=PCK1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 85/166 (51.20%), Postives = 101/166 (60.84%), Query Frame = 1
Query:  193 DSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPSTHSFHYTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVVKDETT 690
            DSA P++A+TI+ELHSLQ+K +  +    SPL + +A   S A                       RE GP +VKGDP    +  G P     H  +        SDS+LKFTHVLYNLSPAELYEQA   +K SFITS+GALATLSGAKTGRSPRDKRVVKD+TT
Sbjct:   17 DSAAPVRAQTIEELHSLQRKAAATAKDSASPLQSISASLASTA-----------------------REYGPNLVKGDP----EAKGAPPAPVKHQQAAAAAAIAASDSSLKFTHVLYNLSPAELYEQAFGQKKSSFITSTGALATLSGAKTGRSPRDKRVVKDDTT 155          

HSP 2 Score: 21.1718 bits (43), Expect = 1.529e-33
Identity = 6/7 (85.71%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  693 RELWWGK 713
            +ELWWGK
Sbjct:  157 QELWWGK 163          
The following BLAST results are available for this feature:
BLAST of FC931211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PCKA_CUCSA6.729e-5154.33Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis... [more]
PCKA_ARATH1.906e-4755.61Phosphoenolpyruvate carboxykinase [ATP] OS=Arabido... [more]
PCKA_MAIZE2.190e-4657.14Phosphoenolpyruvate carboxykinase [ATP] OS=Zea may... [more]
PCKA2_UROPA8.358e-3552.35Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Uroch... [more]
PCKA1_UROPA1.529e-3351.20Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Uroch... [more]
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Properties
Property NameValue
Genbank descriptionC34102F11EF PostHarvP1 Citrus clementina cDNA clone C34102F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931211 ID=FC931211; Name=FC931211; organism=Citrus clementina; type=EST; length=714bp
GATATCTCAACATAAGACTAGGAAATTTTGTTCGTTCATCCTTATCCTCG
TTTTCAGAGAGAAAGAGAAACTGAAGAAATGGCTGAGAACGGAGAGTTCA
GTTTTACGAGCAGGGCTAGAAGCACAGGACGAAACGGGCTACCGAGAATC
CAAACGAATAATAAAAATAAAGAAACGTTGGTGTGTCACGATGACAGCGC
AACGCCGATAAAGGCAAAGACGATCGACGAGCTTCACTCTCTTCAGAAGA
AGAGATCGACACCCAGCACTCCCATCAAATCCCCTCTCGCCACGGCGACT
GCACCCGACGGTTCATTTGCCGTCATCTCCGAAGAGGAACGCCAAAGGCA
GCAACTCCAGTCCATAAGTGCTTCGTTGGCATCTTTGACGAGGGAGACAG
GGCCAAAGGTGGTGAAAGGGGACCCGGCAACGCCTAGGAAGGTAGATGGC
CAGCCGTCCACGCACTCATTTCATTATACATCGACTCCAACGTTTGACGA
CAATATTAGCGACAGTGCACTCAAGTTTACACACGTCCTTTACAATCTTT
CCCCTGCTGAGCTTTACGAGCAAGCCGTTAAGTACGAGAAGGGGTCCTTT
ATTACGTCATCTGGAGCTTTAGCGACGCTATCAGGTGCAAAGACGGGACG
CTCCCCGAGAGACAAGCGGGTGGTTAAGGACGAGACCACGAACGCGAGCT
CTGGTGGGGAAAGG
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