FC931261

Overview
NameFC931261
Unique NameFC931261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length468
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 8.076e-40
Identity = 79/120 (65.83%), Postives = 93/120 (77.50%), Query Frame = 1
Query:    1 TEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPY 360
            TEDP+DE  K F E PE  LL T+PSQ QAT VM  LD+LSTHSPDEEY+G++ E +W  +PVINAAFE+F+GKL  LEG+ID RN +  L+NR GAG+V YELLKP SE GVTG GVPY
Sbjct:  773 TEDPTDEALKEFYESPEKVLLKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPY 892          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.234e-39
Identity = 73/118 (61.86%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    4 EDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            E+  D++ K F+ +PE  LL + PSQ+QA KVMA LD+LS+HSPDEEY+G+  EPAW  +P++ AAFEKF G+L E EG ID RN +P+ +NR GAG+VPYELLKPFSEPGVTG+G+P
Sbjct:  774 EENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIP 891          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.631e-32
Identity = 67/119 (56.30%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    4 EDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLSTHS DEEYLG E    W  D  + AA+  F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  818 EEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIP 936          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.130e-32
Identity = 66/119 (55.46%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    4 EDPSD-EQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            E+P D    + FL+ P+ AL   FPSQ+QAT VMA+LDVLS+HS DEEYLG E    W  D  + AA++ F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  801 EEPVDGAAMERFLDNPDQALRECFPSQVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIP 919          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.840e-27
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            D SD ++  F+E P+    ++ PS +Q TK MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  ID RN DP  RNR GAG++PYEL+ P SEPGVT +GVP
Sbjct:  804 DESDPEFTSFIEDPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVP 921          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.747e-26
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 1
Query:   13 SDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLG--KEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            +D  ++ F+  P+ + L + P+Q+QATKVMA+ + LSTHSPDEEYL   +E++  W +D  +   F KF  +L+++E  I+ RN D KL+NR GAGM PYELL P S  GVTG+G+P
Sbjct:  796 TDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIP 912          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.082e-26
Identity = 59/118 (50.00%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    7 DPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            D SD ++  F+  PE    ++ PS  Q +K MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  I+ RNADP  RNR GAG++PYELL P SEPGVT +GVP
Sbjct:  797 DESDPEYASFISHPEKYYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVP 914          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.294e-25
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1
Query:   34 FLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 321
            F+E PE  LL+TFPSQ Q+  V+AILD+LSTHS DEEY+G   EPAW +D VIN AFE+F+    ++   +D  N DP  +NR+GAGMVPY LL+P
Sbjct:  814 FVEAPEKVLLDTFPSQYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRP 909          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 4.026e-23
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 1
Query:   16 DEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            D ++   +  P    L+  PS  Q T  M ++D LSTHS DEEYLG+  + AW  DP   AA  +F   +   E  I+ RNADP  RNR GAG++PYEL+ P S PG+T +GVP
Sbjct:  781 DPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVP 894          
BLAST of FC931261 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.692e-21
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   22 QWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPA---WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 357
            ++  FL  P    LN  P  ++ATK MA++D LSTHSPDEEYLG+  +     W  D    AA   F   +   E  I+ RNAD   +NR GAG++PYELL P S PGVT +GVP
Sbjct:  799 EYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVP 913          
The following BLAST results are available for this feature:
BLAST of FC931261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX2_ARATH8.076e-4065.83Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU5.234e-3961.86Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC2_ORYSJ1.631e-3256.30Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ2.130e-3255.46Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX4_ARATH7.840e-2750.00Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH1.747e-2648.72Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX3_ARATH5.082e-2650.00Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU3.294e-2557.29Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ4.026e-2345.61Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ1.692e-2146.96Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionC34103C04EF PostHarvP1 Citrus clementina cDNA clone C34103C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931261 ID=FC931261; Name=FC931261; organism=Citrus clementina; type=EST; length=468bp
ACTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGA
AAATGCACTTTTGAATACCTTCCCTTCCCAGATTCAAGCTACTAAAGTTA
TGGCTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTATTTA
GGAAAAGAAATAGAGCCAGCATGGCGTGAGGATCCGGTTATAAATGCAGC
ATTTGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTGATG
CAAGGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATGGTG
CCATATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAAAGG
AGTTCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATCGCT
CGAATGTTGTATCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAATCA
AATAAATTGCAGTTAATG
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