FC931323

Overview
NameFC931323
Unique NameFC931323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15321 contig Ccv1_Contig15321:2..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.068e-94
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPSTASF 714
            +HAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEE+QIFQNVQMSVNFLVSLLKKNW NVRCLYLKSTMGP    F
Sbjct:  107 FHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

HSP 2 Score: 163.696 bits (413), Expect = 1.068e-94
Identity = 79/92 (85.87%), Postives = 86/92 (93.48%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSKLQS+A+REAISSI+ + KET  RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRPKMK+CMLGDAQHVEEAEKIGL+ MDVE LKK
Sbjct:    1 MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.382e-91
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPSTASF 714
            YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEE+QIFQNVQMSVNFLVSLLKKNW NVRCLYLKSTMGP    F
Sbjct:  106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

HSP 2 Score: 151.369 bits (381), Expect = 2.382e-91
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSKLQS+A+REAI++I   S E  KRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL+ MDVE LKK
Sbjct:    1 MSKLQSEAVREAITTITGKS-EAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVESLKK 91
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.607e-90
Identity = 102/111 (91.89%), Postives = 106/111 (95.50%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGPSTASF 714
            YHAFLASESVIKQIPRLLGPGLNKAGKFPTLV+HQESLE+KVNETKATVKFQLKKVLCMGVAVGNLSMEE+Q+FQNVQMSVNFLVSLLKKNW NVRCLYLKSTMGP    F
Sbjct:  106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

HSP 2 Score: 149.828 bits (377), Expect = 2.607e-90
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSKLQS+A+REAI++I   S+E  KRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDAQHVEEAEK+GL  MDVE LKK
Sbjct:    1 MSKLQSEAVREAITTIKGKSEE-KKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVEALKK 91
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_SPOFR (60S ribosomal protein L10a OS=Spodoptera frugiperda GN=RpL10A PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.380e-67
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGP 699
            Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K++E KAT+KFQ+KKVLC+ VAVG++ M  +++ QNV +S+NFLVSLLKK+W NVR L++KSTMGP
Sbjct:  107 YDAFLASESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKATIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGP 212

HSP 2 Score: 119.398 bits (298), Expect = 2.380e-67
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L E +++++Q SK+  KRNF ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD QH +EA+ + +  MD E LKK
Sbjct:    3 SKVSRDTLYECVNAVLQASKD-KKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKSLTVPCMDAEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: R10AB_DROME (60S ribosomal protein L10a-2 OS=Drosophila melanogaster GN=RpL10Ab PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.103e-67
Identity = 73/106 (68.87%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGP 699
            Y AFLASES+IKQIPRLLGPGLNKAGKFP L++HQES+  K+ E K+T+KFQ+KKVLC+ VAVG++ M+ +++ QNV +S+NFLVSLLKKNW NVR L++KS+MGP
Sbjct:  107 YDAFLASESLIKQIPRLLGPGLNKAGKFPALLSHQESMIGKIEEVKSTIKFQMKKVLCLSVAVGHVGMKSDELAQNVNLSINFLVSLLKKNWQNVRSLHVKSSMGP 212

HSP 2 Score: 119.398 bits (298), Expect = 3.103e-67
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L E ++ +++ S +  KR F ET+ELQIGLKNYDPQKDKRFSG+VKL HIPRPKMKVC+LGD QH +EA+   +D+MD E LKK
Sbjct:    3 SKVSRDTLYEGVNGLLEASAK-KKRGFLETVELQIGLKNYDPQKDKRFSGTVKLKHIPRPKMKVCILGDQQHCDEAKANNVDFMDAEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_XENLA (60S ribosomal protein L10a OS=Xenopus laevis GN=rpl10a PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 6.273e-65
Identity = 73/105 (69.52%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ + EE++  N+ +S+NFLVSLLKKNW NVR LY+KSTMG
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLVAKVDEVKSTIKFQMKKVLCLAVAVGHVKLTEEELVYNIHLSINFLVSLLKKNWQNVRALYIKSTMG 211

HSP 2 Score: 110.923 bits (276), Expect = 6.273e-65
Identity = 53/91 (58.24%), Postives = 68/91 (74.73%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L EA+  ++Q SK+  KR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  +C+LGD QH +EA+ + L +MD+E LKK
Sbjct:    3 SKVSRDTLYEAVREVLQGSKK-KKRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSLCVLGDQQHCDEAKAVDLPHMDIEALKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_DANRE (60S ribosomal protein L10a OS=Danio rerio GN=rpl10a PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.365e-64
Identity = 74/105 (70.48%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M EE++  N+ ++VNFLVSLLKKNW NVR LY+KSTMG
Sbjct:  106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLGTKVDEVKSTIKFQMKKVLCLAVAVGHVKMSEEELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMG 210

HSP 2 Score: 108.227 bits (269), Expect = 2.365e-64
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+  D L EA+   VQ      KR F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   L +MD+E LKK
Sbjct:    1 MSKVSRDTLYEAVKE-VQAGSRRKKRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAELPHMDIEALKK 91
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_NEUCR (60S ribosomal protein L10a OS=Neurospora crassa GN=rpl-10a PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.838e-64
Identity = 69/106 (65.09%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMGP 699
            Y AF+ASE++IKQIPRLLGPGL+KAGKFPT V+H + L  K+NE K+T+KFQLKKVLCMGVAVGN+ M +EQ+  N+ +++N+LVSLLKK W NV  L +K+TM P
Sbjct:  107 YDAFVASEALIKQIPRLLGPGLSKAGKFPTPVSHSDDLTGKLNEVKSTIKFQLKKVLCMGVAVGNVGMTQEQLVGNIMLAINYLVSLLKKGWQNVGSLTIKATMSP 212

HSP 2 Score: 118.242 bits (295), Expect = 6.838e-64
Identity = 52/92 (56.52%), Postives = 72/92 (78.26%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+   A+R+ ++ +++YS ET KRNF ET+ELQIGLKNYDPQ+DKRFSG+++LP IPRP M +C+LGD   ++ A+  G+D M V+ LKK
Sbjct:    1 MSKISVAAVRQHVTDLLEYSNETKKRNFLETVELQIGLKNYDPQRDKRFSGTIRLPSIPRPNMSICILGDQHDIDRAKHGGVDAMSVDDLKK 92
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_ICTPU (60S ribosomal protein L10a OS=Ictalurus punctatus GN=rpl10a PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.451e-63
Identity = 72/105 (68.57%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E+L +KV+E K+T+KFQ+KKVLC+ VAVG++ M E+++  N+ ++VNFLVSLLKKNW NVR LY+KS+MG
Sbjct:  106 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENLNTKVDEVKSTIKFQMKKVLCLAVAVGHVRMSEDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSSMG 210

HSP 2 Score: 105.531 bits (262), Expect = 7.451e-63
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 3 
Query:   63 MSKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            MSK+  D L EA+   VQ    + +R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+   + +MD+E LKK
Sbjct:    1 MSKVSRDTLYEAVRE-VQAGSISKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKTTPRPKFSVCVLGDQQHCDEAKAAEIPHMDIEALKK 91
[Close]
BLAST of FC931323 vs. ExPASy Swiss-Prot
Match: RL10A_RAT (60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.451e-63
Identity = 71/105 (67.62%), Postives = 93/105 (88.57%), Query Frame = 1 
Query:  382 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEEQIFQNVQMSVNFLVSLLKKNW*NVRCLYLKSTMG 696
            Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M ++++  N+ ++VNFLVSLLKKNW NVR LY+KSTMG
Sbjct:  107 YDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMG 211

HSP 2 Score: 106.686 bits (265), Expect = 7.451e-63
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 3 
Query:   66 SKLQSDALREAISSIVQYSKETNKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGLKK 338
            SK+  D L EA+  ++ +  +  +R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E LKK
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKK 92
The following BLAST results are available for this feature:
BLAST of FC931323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
R10A3_ARATH1.068e-9492.7960S ribosomal protein L10a-3 OS=Arabidopsis thalia... [more]
R10A1_ARATH2.382e-9193.6960S ribosomal protein L10a-1 OS=Arabidopsis thalia... [more]
R10A2_ARATH2.607e-9091.8960S ribosomal protein L10a-2 OS=Arabidopsis thalia... [more]
RL10A_SPOFR2.380e-6769.8160S ribosomal protein L10a OS=Spodoptera frugiperd... [more]
R10AB_DROME3.103e-6768.8760S ribosomal protein L10a-2 OS=Drosophila melanog... [more]
RL10A_XENLA6.273e-6569.5260S ribosomal protein L10a OS=Xenopus laevis GN=rp... [more]
RL10A_DANRE2.365e-6470.4860S ribosomal protein L10a OS=Danio rerio GN=rpl10... [more]
RL10A_NEUCR6.838e-6465.0960S ribosomal protein L10a OS=Neurospora crassa GN... [more]
RL10A_ICTPU7.451e-6368.5760S ribosomal protein L10a OS=Ictalurus punctatus ... [more]
RL10A_RAT7.451e-6367.6260S ribosomal protein L10a OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34103H06EF PostHarvP1 Citrus clementina cDNA clone C34103H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931323 ID=FC931323; Name=FC931323; organism=Citrus clementina; type=EST; length=722bp
GAGGGTTTCTTTTTCGTCTTCGAAGAAAAAAAAATCTGTAAAGGACTCCA
AGCGCTTCAATCATGAGCAAGCTTCAGAGTGATGCACTGAGAGAGGCCAT
CTCTAGTATTGTGCAATACTCTAAGGAGACAAATAAGAGGAACTTCACCG
AGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAGGAC
AAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAAGAT
GAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGAAGA
TTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAAATTGAACAAGAA
CAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGCAT
CAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCAAC
AAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAGTC
CAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGTGC
TTTGCATGGGAGTTGCTGTCGGAAACCTTTCAATGGAGGAGGAGCAGATC
TTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAGAA
AAACTGGTAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCCTT
CAACCGCATCTTTTAAGAAATC
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