FC931355

Overview
NameFC931355
Unique NameFC931355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 4.176e-72
Identity = 130/198 (65.66%), Postives = 159/198 (80.30%), Query Frame = 2
Query:   50 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVA-SFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQS-PQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNSLG 637
            +NKQVI  D+V+GFPKESD    T ++ L+VPEGSK ++L+KNLYLSCDPYMR RM K D  S +A ++ PG+P+ GYGVS+V++S HP+YKK DL+WG+  WEE S+I     +  KI  T+VPLSYYTG+LGMPG+TAY G YE+ SPKKGE VYVSAASGAVGQLVGQFAK++GC+VVGSAGSKEKVDLLK   G
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFG 199          

HSP 2 Score: 30.4166 bits (67), Expect = 4.176e-72
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  619 VEEQFGFDDAFNYKED 666
            ++ +FGFDDAFNYKE+
Sbjct:  194 LKTKFGFDDAFNYKEE 209          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 3.190e-69
Identity = 127/200 (63.50%), Postives = 158/200 (79.00%), Query Frame = 2
Query:   50 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVA---SFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQS-PQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNSLG 637
            +NKQVIL DYV+GFP ESD    T ++ L+VPEG+ +++L+KNLYLSCDPYMR RM K D PS  A   ++ PG+P+ GYGVS++++S HP+YKK DL+WG+ +WEE S+I        KI  T+VPLSYYTG+LGMPG+TAY G YE+ SPK+GE VYVSAASGAVGQLVGQ AK++GC+VVGSAGSKEKVDLLK   G
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPD-PSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG 201          

HSP 2 Score: 30.4166 bits (67), Expect = 3.190e-69
Identity = 11/16 (68.75%), Postives = 15/16 (93.75%), Query Frame = 1
Query:  619 VEEQFGFDDAFNYKED 666
            ++ +FGFDDAFNYKE+
Sbjct:  196 LKTKFGFDDAFNYKEE 211          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34
Identity = 91/196 (46.43%), Postives = 116/196 (59.18%), Query Frame = 2
Query:   50 SNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVL-DSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNSL 634
            S +Q+ L+    G P   D +  T    + VPE  +  +L+K LY+S DPYMRGRM   D  S+V  F   + LSG  +++V+ D  H   KK D+V G  SW+E S + S   L KI  +  P S Y GILGM GLTAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK+D LK  L
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAV-SESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQEL 190          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.676e-30
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 2
Query:   35 GEEAVSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEK 610
            G++   N++ +L+    G P   + ++        V    +  +LL+ +YLS DPYMRGRMS  D+PS+      G  + G  VS+V++S HP+Y+  D V G + W++   I S   L+K+ D     S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK
Sbjct:    2 GQQKQRNRRWVLASRPHGAPVPENFRLEEDD----VATPGEGQVLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEK 186          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.852e-28
Identity = 77/195 (39.49%), Postives = 111/195 (56.92%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLK 625
            V  K   L  +  G P +SD ++ T    +++P  +   +LL+ L+LS DPYMR    +L         K G+ + G  V++V++S +P +    LV   + W   S+    QL  L+      +PLS   G +GMPG+TAY GL E+   K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKVD LK
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRL---------KEGDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHSISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK 183          

HSP 2 Score: 21.9422 bits (45), Expect = 2.852e-28
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  625 EQFGFDDAFNYK 660
            ++ GFD AFNYK
Sbjct:  183 KKIGFDFAFNYK 194          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 81/204 (39.71%), Postives = 114/204 (55.88%), Query Frame = 2
Query:   47 VSNKQVILSDYV---TGFPKESD-MKIITGSINLKVPEGSKDT-LLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTN----VPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNS 631
            VSN  VI+  Y+    G+P   + +       +L+  +  ++T +LLKN+Y S DPY+R RM      S++   + G+P     V+KV+ ST   YK    V  ++ WEE + + S Q L  +   N    +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK +G HVVGS GS EK  +  +S
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETPVLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFV-SKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS 204          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.942e-26
Identity = 77/195 (39.49%), Postives = 107/195 (54.87%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILD--TNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLK 625
            V  K   L  +  GFP + + ++ T     ++P  +   +LL+ L+LS DPYMR    KL         K G+ + G  V++V++S +  + K  +V  L  W   S+     L    ++    +PLS   G +GMPGLTAY GL ++   K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK
Sbjct:    2 VQAKSWTLKKHFEGFPTDGNFELKT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKL---------KEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHSISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK 183          

HSP 2 Score: 21.9422 bits (45), Expect = 1.942e-26
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  625 EQFGFDDAFNYK 660
            ++ GFD AFNYK
Sbjct:  183 KKLGFDVAFNYK 194          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 80/197 (40.61%), Postives = 110/197 (55.84%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKIL----DTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLK 625
            V  K   L  +  G+P  SD ++ T    +++P      +LL+ LYL+ DPYMR             S K G+ + G  V++V++S +  +    +V   + W   S I + + L K+L    DT +PLS   G +GMPGLTAY GL ++   K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  LK
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKT----VELPPLKDGEVLLEALYLTVDPYMR---------IMAKSLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDT-LPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK 183          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 7.254e-26
Identity = 75/195 (38.46%), Postives = 106/195 (54.36%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLK 625
            V  K   L  +  G+P  S+ ++ T    +++P      +LL+ L+L+ DPYMR    KL         K G+ + G  V++V++S +  +    +V  L  W   S+     L  L+      +PLS   G +GMPGLTAY GL ++   K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKT----VELPPLKNGEVLLEALFLTVDPYMRIAARKL---------KEGDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK 183          

HSP 2 Score: 23.0978 bits (48), Expect = 7.254e-26
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 1
Query:  625 EQFGFDDAFNYK 660
            +++GFD AFNYK
Sbjct:  183 KKYGFDVAFNYK 194          
BLAST of FC931355 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 9.442e-26
Identity = 77/195 (39.49%), Postives = 106/195 (54.36%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGEYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLK 625
            V  K   L  +  GFP +S+ ++ T     ++P  +   +LL+ L+LS DPYMR    KL         K G+ + G  V++V++S +  +    +V  L  W   S+     L  L       +PLS   G +GMPGLTAY GL ++   K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  LK
Sbjct:    2 VQAKTWTLKKHFEGFPTDSNFELRT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKL---------KEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHSISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK 183          

HSP 2 Score: 21.9422 bits (45), Expect = 9.442e-26
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 1
Query:  625 EQFGFDDAFNYK 660
            ++ GFD AFNYK
Sbjct:  183 KKLGFDVAFNYK 194          
The following BLAST results are available for this feature:
BLAST of FC931355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH4.176e-7265.66Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH3.190e-6963.50Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU6.805e-3446.43Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YNCB_ECOLI2.676e-3040.10Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_RABIT2.852e-2839.49Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
YKM8_SCHPO3.271e-2839.71Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_MOUSE1.942e-2639.49Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN5.222e-2640.61Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG7.254e-2638.46Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_RAT9.442e-2639.49Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34104C02EF PostHarvP1 Citrus clementina cDNA clone C34104C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931355 ID=FC931355; Name=FC931355; organism=Citrus clementina; type=EST; length=685bp
GATCCAAAAACAAAATCTACATAAAAAAATGGCGGGTGAAGAAGCAGTGA
GCAACAAGCAGGTGATTCTGAGCGACTACGTGACAGGGTTTCCAAAAGAA
TCAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGG
CTCAAAAGACACATTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTT
ACATGAGAGGACGTATGAGCAAGCTTGATAAGCCTTCGTTTGTTGCCTCC
TTCAAGCCTGGCGAGCCTTTGAGCGGATATGGAGTGTCCAAAGTGTTGGA
TTCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCA
GTTGGGAGGAGTGCAGTCTCATCCAATCACCACAACTTCTGATTAAAATT
CTGGATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCC
TGGTTTGACTGCATATGGTGGTTTATATGAGCTTTCCTCTCCTAAGAAAG
GAGAGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGCCAGCTTGTT
GGGCAATTTGCGAAGTTGGTTGGTTGCCATGTTGTTGGAAGTGCCGGAAG
CAAAGAAAAGGTCGATCTGTTGAAGAACAGTTTGGGTTTGATGACGCTTT
TAACTATAAGGAAGACCAGACTTAGATGCAGCTCT
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