FC931377

Overview
NameFC931377
Unique NameFC931377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.149e-29
Identity = 66/93 (70.97%), Postives = 77/93 (82.80%), Query Frame = 1
Query:  436 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSES+  + +     +TCGTT   L+
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLA 95          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1
Query:  439 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSES+  + +     +TCGTT   L+
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLA 95          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.577e-28
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1
Query:  433 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVLSES+  + +     +TCGTT   L+
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLA 95          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.689e-28
Identity = 64/93 (68.82%), Postives = 74/93 (79.57%), Query Frame = 1
Query:  436 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN+YLDSYVLSES+  +       +TCGTT   LS
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLS 93          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.512e-28
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 1
Query:  433 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN+Y+DSYVLSES+  + +     +TCGTT   L+
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLA 95          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.587e-28
Identity = 63/93 (67.74%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  436 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN+Y+DSYVLSES+  + +     +TCGTT   L+
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLA 93          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.825e-28
Identity = 64/93 (68.82%), Postives = 74/93 (79.57%), Query Frame = 1
Query:  436 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSES+  +       +TCGTT   LS
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLS 93          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.973e-27
Identity = 63/93 (67.74%), Postives = 73/93 (78.49%), Query Frame = 1
Query:  436 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSES+  +       +TCGTT   LS
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLS 93          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  442 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSES+  +       +TCGTT   LS
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKLIIKTCGTTKLLLS 91          
BLAST of FC931377 vs. ExPASy Swiss-Prot
Match: DCAM2_ARATH (S-adenosylmethionine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.324e-26
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 1
Query:  442 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVLSESA-SLCTLTSYYQTCGTTSCFLS 711
            + +SAIGFEGYEKRLEV+FFEPG+F D  G+GLR+L+K Q+DEIL+PAECTIVSSLSN+ LDSYVLSES+  +       +TCGTT   LS
Sbjct:    1 MAMSAIGFEGYEKRLEVTFFEPGLFLDTQGKGLRALAKSQIDEILQPAECTIVSSLSNDQLDSYVLSESSLFIFPYKIVIKTCGTTKLLLS 91          
The following BLAST results are available for this feature:
BLAST of FC931377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DCAM_NICSY4.149e-2970.97S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_TOBAC1.577e-2870.65S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_SOLTU1.577e-2868.09S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_CATRO2.689e-2868.82S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_DATST3.512e-2867.02S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_SOLCI4.587e-2867.74S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_IPONI7.825e-2868.82S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPOBA2.973e-2767.74S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_PEA5.608e-2667.03S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]
DCAM2_ARATH7.324e-2665.93S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34104E02EF PostHarvP1 Citrus clementina cDNA clone C34104E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931377 ID=FC931377; Name=FC931377; organism=Citrus clementina; type=EST; length=715bp
TGTGATTGGACATGGGTCTCAGATTCAGATCTGTTATTCTGATAAGGGTG
CTGATGTCTGGTAGTATTGTTCTTGCAGGAGAAAGGCTGAATGATCTAAT
GGAGTCAAAAGGTGGTAAGAAGAAGTCTAGCAGTAGTTCCTTATTCTACG
AAGCTCCTCTTGGTTACAGCATTGAAGACGTTCGACCTCACGGTGGCATA
AAGAAGTTCAGATCAGCTGCTTACTCAAACTGCGTCCGCAAACCATCCTG
AGATCGTCCAATTTGTCCCATACCCCCCCAAAAAAAAGCTCACTACTACT
GCAATTTTAATTTTTTTTAGTTTTAGCCGTCTTAATACTGCAATTTACTT
GGCCTATTTCTTTTTCGACTTCCCTCGTTCTCTCGTTCTGCCCTCTTTGC
TCTTTGCAATTGTCATTTGTTTTCTGTAAGGCAAGATGGCCTTGCCAGTC
TCTGCAATTGGATTTGAAGGTTATGAAAAGAGGCTTGAAGTTTCCTTTTT
TGAGCCTGGTGTCTTTGCTGATCCTGGAGGTAGGGGCCTCCGCTCTCTGT
CAAAACATCAATTGGATGAAATACTGAAACCTGCGGAATGCACAATTGTT
TCTTCGTTGTCAAATGAATATCTTGATTCATATGTCCTCTCAGAATCAGC
CTCTTTGTGTACCCTTACAAGTTATTATCAAACTTGTGGGACTACCAGCT
GCTTTCTTTCATCCT
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