FC931456

Overview
NameFC931456
Unique NameFC931456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931456 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 68/200 (34.00%), Postives = 88/200 (44.00%), Query Frame = 2
Query:   77 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAVFFD--------YESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQSQPSNCSSEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTN-----RXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDT 637
            MATP E SAL  I+++L  E SP+                          + ND   FD        +E+KP+IIDLVTP+P         + F+FD++ +I S+ SN S  F+                       P + +   F                    HYRGVR RPWGK+AAEIRDPTRRG RVWL TF+T
Sbjct:    1 MATPNEVSALFLIKKYLLDELSPLP------------------TTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKP---------EIFDFDVKSEIPSE-SNDSFTFQSNPPRVTVQSNRKPPLKIAP---PNRTKWIQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFET 169          
BLAST of FC931456 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 67/195 (34.36%), Postives = 84/195 (43.08%), Query Frame = 2
Query:   77 MATPIEKSALEFIEQHLFGENSPIAGFXXXXXXXXXXXXXXXXXXXXXXXFFNDAV----FFDYESKPQIIDLVTPQPTNTCSELTNDFFEFDIRPQIQS---QPSNCS-SEFEXXXXXXXXXXXXXXXXXXXXXXVPKKAEGHHFTNRXXXXXXXXXXXXHYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDT 637
            MATP E SAL FIE+HL  E SP+A                           + +     F +   KP+IIDL TP+      E  +  FEFD    +     +PSN + ++FE                      +   AE    T              HYRGVR+RPWGK+AAEIRDP +RG RVWL TFDT
Sbjct:    1 MATPNEVSALWFIEKHLLDEASPVATDPWMKHESSSATESSSDSSSIIFGSSSSSFAPIDFSESVCKPEIIDLDTPRSM----EFLSIPFEFDSEVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAEN---TKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDT 188          
BLAST of FC931456 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 2
Query:  536 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDT 637
            HYRGVRRRPWGKYAAEIRDP ++GVRVWL TFDT
Sbjct:   71 HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDT 104          
BLAST of FC931456 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2
Query:  536 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDT 637
            HYRGVR+RPWGK+AAEIRDP R+G RVWL TFDT
Sbjct:  144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 177          
BLAST of FC931456 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 2
Query:  536 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDT 637
            HYRGVR+RPWGK+AAEIRDP R+G RVWL TFDT
Sbjct:  137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDT 170          
BLAST of FC931456 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 2
Query:  536 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLXTFDT 637
            HYRGVRRRPWGKYAAEIRDP ++G R+WL T+DT
Sbjct:   87 HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDT 120          
The following BLAST results are available for this feature:
BLAST of FC931456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EF103_ARATH6.955e-1834.00Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF102_ARATH4.985e-1634.36Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF105_ARATH3.343e-1288.24Ethylene-responsive transcription factor ERF105 OS... [more]
ERF5_TOBAC3.697e-1182.35Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY3.697e-1182.35Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF104_ARATH3.697e-1179.41Ethylene-responsive transcription factor ERF104 OS... [more]
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Properties
Property NameValue
Genbank descriptionC34105C09EF PostHarvP1 Citrus clementina cDNA clone C34105C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931456 ID=FC931456; Name=FC931456; organism=Citrus clementina; type=EST; length=691bp
GATCCAGCATACTCAAAACTCTTCAATATTTTTAAGATTCAAAAACTCTA
TAAGGGACACAGCTTGCTTAGTTGCCATGGCTACACCAATTGAAAAATCA
GCGCTCGAGTTTATCGAGCAACATTTGTTCGGCGAAAATTCTCCTATTGC
GGGATTTAGTTCGAGTTTGTCGAGCGACACTTGCTCGCAATCGCAAACGT
CCAGCTCTGCATCTTCAGATCGTAGTTTCTTCAACGATGCCGTTTTCTTC
GACTATGAATCCAAACCTCAAATCATTGATCTTGTTACACCGCAACCCAC
TAATACTTGCTCTGAATTGACTAACGATTTCTTTGAATTTGACATTAGAC
CTCAAATCCAATCGCAACCGAGCAATTGTAGCTCGGAATTCGAACCCAAG
CCTAAAATATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCT
GAAAATCTCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGA
AAAGCAAGGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTT
CGACGGAGGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCG
GAGAGGCGTACGTGTCTGGCTGGNGACATTTGACACGGCCATTGAAGCAG
CTAGGGCGTACGACCGTGCCGCTTTCAGCTGCGCGGCTCGA
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