FC931469

Overview
NameFC931469
Unique NameFC931469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931469_ssr23 microsatellite FC931469_ssr23:23..32. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931469_ssr496 microsatellite FC931469_ssr496:496..510. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 7.982e-63
Identity = 121/207 (58.45%), Postives = 133/207 (64.25%), Query Frame = 1
Query:   64 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPSVKC-SGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            MASWVLSECGL+PLP ++P+PRTG      NP+K RF     S TDL   S  C S    R+KNW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y                Y NNWVVWPLYW AQ TMFWALFVLGHDCGHGSFSND KLNSVVGH+LHSSI
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSI 192          

HSP 2 Score: 26.5646 bits (57), Expect = 7.982e-63
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  193 LVPYHGWRIS 202          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.769e-62
Identity = 117/204 (57.35%), Postives = 133/204 (65.20%), Query Frame = 1
Query:   64 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPSVKCSGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            MA+W   +CGLKPL  + PRPRTG    + S+  FL + K +   K   ++C+    R++NWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY                YLNNW+VWPLYWAAQGTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSI
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSI 196          

HSP 2 Score: 26.5646 bits (57), Expect = 1.769e-62
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  197 LVPYHGWRIS 206          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.109e-55
Identity = 111/205 (54.15%), Postives = 122/205 (59.51%), Query Frame = 1
Query:   67 ASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLK----LPSVKCSG-DFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            A WVLSECGL+PLP I+ RPR G   SK   L   + L D K      S K S    S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY                Y NNWV WPLYW  QGTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSI
Sbjct:    3 AGWVLSECGLRPLPRIYSRPRIGFT-SKTTNLLKLRELPDSKSYNLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSI 202          

HSP 2 Score: 26.5646 bits (57), Expect = 1.109e-55
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  203 LVPYHGWRIS 212          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 4.178e-55
Identity = 111/209 (53.11%), Postives = 126/209 (60.29%), Query Frame = 1
Query:   64 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPSVKCSGDFSRD---KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            MA+ VLSECG++PLP I+  PR+    +  +F  S  S +     S    G  SRD   +NW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY                YLNNW+VWPLYW AQGTMFWALFVLGHDCGHGSFSND KLNSVVGHLLHSSI
Sbjct:    1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPLSFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSI 188          

HSP 2 Score: 26.5646 bits (57), Expect = 4.178e-55
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  189 LVPYHGWRIS 198          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 9.123e-52
Identity = 107/206 (51.94%), Postives = 120/206 (58.25%), Query Frame = 1
Query:   64 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPSVKCS---GDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            MAS VLSECG +PLP  +P+  T    NP K  F    K    LK PS   +   G +S+ +NW L V+ PL       E+                        FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY                Y NNW++WPLYW AQGTMFWALFVLGHDCGHGSFSND +LNSV GHLLHSSI
Sbjct:    1 MASSVLSECGFRPLPRFYPKHTTSFASNP-KPTF----KFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSI 181          

HSP 2 Score: 26.5646 bits (57), Expect = 9.123e-52
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  182 LVPYHGWRIS 191          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.339e-46
Identity = 89/150 (59.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  232 KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            +NW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY                YLNNW+VWPLYW AQGTMFWALFVLGHDCGHGSFSND +LNSVVGHLLHSSI
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSI 146          

HSP 2 Score: 26.5646 bits (57), Expect = 2.339e-46
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  147 LVPYHGWRIS 156          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.819e-37
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 1
Query:  364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                Y+++W +WPLYWAAQGT+FWA+FVLGHDCGHGSFS+   LNSVVGH+LHS I
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFI 126          

HSP 2 Score: 27.7202 bits (60), Expect = 2.819e-37
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  660 FNLVPYHGWRIA 695
            F LVPYHGWRI+
Sbjct:  125 FILVPYHGWRIS 136          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.058e-36
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 1
Query:  364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            FDP A PPFK+ DIRAAIPKHCWVK P +SMSY                Y ++W +WPLYW AQGT+FWA+FVLGHDCGHGSFS+   LNSVVGH+LHS I
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFI 123          

HSP 2 Score: 27.7202 bits (60), Expect = 1.058e-36
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  660 FNLVPYHGWRIA 695
            F LVPYHGWRI+
Sbjct:  122 FILVPYHGWRIS 133          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.058e-36
Identity = 67/101 (66.34%), Postives = 72/101 (71.29%), Query Frame = 1
Query:  364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            FDPGAPPPFK+ADIRAAIPKHCW K   +S+SY                  N+W  WPLYW AQGTMFWALFVLGHDCGHGSFSN  KLNS VGH+LHS I
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLI 122          

HSP 2 Score: 23.8682 bits (50), Expect = 1.058e-36
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPY+GWRI+
Sbjct:  123 LVPYNGWRIS 132          
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.968e-36
Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 1
Query:  364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666
            FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY                + +NW++W +Y   QGTMFWALFVLGHDCGHGSFS+   LNS+VGH+LHSSI
Sbjct:   25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSI 125          

HSP 2 Score: 26.5646 bits (57), Expect = 3.968e-36
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  666 LVPYHGWRIA 695
            LVPYHGWRI+
Sbjct:  126 LVPYHGWRIS 135          
The following BLAST results are available for this feature:
BLAST of FC931469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
FAD3C_SESIN7.982e-6358.45Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN1.769e-6257.35Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_RICCO1.109e-5554.15Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_ARATH4.178e-5553.11Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH9.123e-5251.94Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA2.339e-4659.33Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_ARATH2.819e-3764.36Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA1.058e-3663.37Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_PHAAU1.058e-3666.34Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN3.968e-3661.39Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC34105D12EF PostHarvP1 Citrus clementina cDNA clone C34105D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931469 ID=FC931469; Name=FC931469; organism=Citrus clementina; type=EST; length=708bp
GACAATTCTTTGACACCTATCTTCTCTCTCTCTAACTCTTTGAGAGGATT
TTTCTGAGACCCAATGGCGAGTTGGGTTCTTTCAGAATGTGGTTTAAAGC
CTCTGCCTCATATTTTTCCGAGGCCAAGGACTGGAATCAATCCCTCAAAG
GCCAGGTTTTTGCACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATC
AGTTAAATGTTCGGGTGATTTTTCTAGAGACAAGAACTGGGGTCTTAAAG
TTAGTGCTCCACTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAG
AGAATCAACGGTGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGA
AGAGGGATCTGAATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTG
ATATTAGAGCTGCTATTCCAAAGCATTGTTGGGTTAAGGATCCTTGGAAG
TCTATGAGCTATGTTGTTAGAGATGTTGTGGTGGTTTTTGCCTTGGCTGC
TGCTGCTGCTTATTTGAACAATTGGGTTGTTTGGCCTTTGTACTGGGCTG
CTCAGGGAACCATGTTTTGGGCTCTTTTTGTGCTCGGTCATGATTGTGGT
CATGGAAGCTTTTCAAATGATCACAAGTTGAATAGTGTGGTGGGGCATCT
GCTGCATTCTTCAATCTGGTTCCTTATCATGGATGGAGAATAGCCCAGGA
CTCATCAT
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