FC931469
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 234.958 bits (598), Expect = 7.982e-63 Identity = 121/207 (58.45%), Postives = 133/207 (64.25%), Query Frame = 1 Query: 64 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPSVKC-SGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 MASWVLSECGL+PLP ++P+PRTG NP+K RF S TDL S C S R+KNW L+VSAPLRV +E E+ FDPGAPPPFKL+DIR AIPKHCWVKDPW+SM Y Y NNWVVWPLYW AQ TMFWALFVLGHDCGHGSFSND KLNSVVGH+LHSSI Sbjct: 1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSI 192 HSP 2 Score: 26.5646 bits (57), Expect = 7.982e-63 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 193 LVPYHGWRIS 202
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 1.769e-62 Identity = 117/204 (57.35%), Postives = 133/204 (65.20%), Query Frame = 1 Query: 64 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPSVKCSGDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 MA+W +CGLKPL + PRPRTG + S+ FL + K + K ++C+ R++NWGLKVSAPLRVA +E E FDPGAPPPF LADIRAAIPKHCWVKDPW+SMSY YLNNW+VWPLYWAAQGTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSI Sbjct: 1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSI 196 HSP 2 Score: 26.5646 bits (57), Expect = 1.769e-62 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 197 LVPYHGWRIS 206
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 1.109e-55 Identity = 111/205 (54.15%), Postives = 122/205 (59.51%), Query Frame = 1 Query: 67 ASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLK----LPSVKCSG-DFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 A WVLSECGL+PLP I+ RPR G SK L + L D K S K S S+ NW L V+ P+ V+ + GED FD GAPPPF LADIRAAIPKHCWVK+PW+SMSY Y NNWV WPLYW QGTMFWALFVLGHDCGHGSFSN+ KLNSVVGHLLHSSI Sbjct: 3 AGWVLSECGLRPLPRIYSRPRIGFT-SKTTNLLKLRELPDSKSYNLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSI 202 HSP 2 Score: 26.5646 bits (57), Expect = 1.109e-55 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 203 LVPYHGWRIS 212
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 4.178e-55 Identity = 111/209 (53.11%), Postives = 126/209 (60.29%), Query Frame = 1 Query: 64 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPSVKCSGDFSRD---KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 MA+ VLSECG++PLP I+ PR+ + +F S S + S G SRD +NW L VS PL +PLE ++ FDPGAPPPF LADIRAAIPKHCWVK+PWKS+SY YLNNW+VWPLYW AQGTMFWALFVLGHDCGHGSFSND KLNSVVGHLLHSSI Sbjct: 1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPLSFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSI 188 HSP 2 Score: 26.5646 bits (57), Expect = 4.178e-55 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 189 LVPYHGWRIS 198
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 9.123e-52 Identity = 107/206 (51.94%), Postives = 120/206 (58.25%), Query Frame = 1 Query: 64 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPSVKCS---GDFSRDKNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 MAS VLSECG +PLP +P+ T NP K F K LK PS + G +S+ +NW L V+ PL E+ FDPGAPPPF LADIRAAIPKHCWVK+PW SMSY Y NNW++WPLYW AQGTMFWALFVLGHDCGHGSFSND +LNSV GHLLHSSI Sbjct: 1 MASSVLSECGFRPLPRFYPKHTTSFASNP-KPTF----KFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSI 181 HSP 2 Score: 26.5646 bits (57), Expect = 9.123e-52 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 182 LVPYHGWRIS 191
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 2.339e-46 Identity = 89/150 (59.33%), Postives = 95/150 (63.33%), Query Frame = 1 Query: 232 KNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 +NW L V+ PL V P+E E FDPGAPPPF LADIRAAIPKHCWVK+PWKSMSY YLNNW+VWPLYW AQGTMFWALFVLGHDCGHGSFSND +LNSVVGHLLHSSI Sbjct: 17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSI 146 HSP 2 Score: 26.5646 bits (57), Expect = 2.339e-46 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 147 LVPYHGWRIS 156
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 2.819e-37 Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 1 Query: 364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 FDP A PPFK+ DIRAAIPKHCWVK P +SMSY Y+++W +WPLYWAAQGT+FWA+FVLGHDCGHGSFS+ LNSVVGH+LHS I Sbjct: 26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFI 126 HSP 2 Score: 27.7202 bits (60), Expect = 2.819e-37 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 Query: 660 FNLVPYHGWRIA 695 F LVPYHGWRI+ Sbjct: 125 FILVPYHGWRIS 136
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.058e-36 Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 FDP A PPFK+ DIRAAIPKHCWVK P +SMSY Y ++W +WPLYW AQGT+FWA+FVLGHDCGHGSFS+ LNSVVGH+LHS I Sbjct: 23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFI 123 HSP 2 Score: 27.7202 bits (60), Expect = 1.058e-36 Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 3 Query: 660 FNLVPYHGWRIA 695 F LVPYHGWRI+ Sbjct: 122 FILVPYHGWRIS 133
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.058e-36 Identity = 67/101 (66.34%), Postives = 72/101 (71.29%), Query Frame = 1 Query: 364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 FDPGAPPPFK+ADIRAAIPKHCW K +S+SY N+W WPLYW AQGTMFWALFVLGHDCGHGSFSN KLNS VGH+LHS I Sbjct: 22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLI 122 HSP 2 Score: 23.8682 bits (50), Expect = 1.058e-36 Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPY+GWRI+ Sbjct: 123 LVPYNGWRIS 132
BLAST of FC931469 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 3.968e-36 Identity = 62/101 (61.39%), Postives = 76/101 (75.25%), Query Frame = 1 Query: 364 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYXXXXXXXXXXXXXXXXYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 666 FDP APPPFK+A+IRA+IPKHCWVK+PW+S+SY + +NW++W +Y QGTMFWALFVLGHDCGHGSFS+ LNS+VGH+LHSSI Sbjct: 25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSI 125 HSP 2 Score: 26.5646 bits (57), Expect = 3.968e-36 Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3 Query: 666 LVPYHGWRIA 695 LVPYHGWRI+ Sbjct: 126 LVPYHGWRIS 135 The following BLAST results are available for this feature:
BLAST of FC931469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931469 ID=FC931469; Name=FC931469; organism=Citrus clementina; type=EST; length=708bpback to top |