FC931480
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_ARATH (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2) HSP 1 Score: 310.071 bits (793), Expect = 7.761e-84 Identity = 145/227 (63.88%), Postives = 186/227 (81.94%), Query Frame = 2 Query: 2 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIIKSSTGNRTSES 682 ++++VY +S+SDK+ LMKE KDE+K AE I+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+DTKILLN N +L QRMKKSSTSLS AFS LCPQI S+S+ LQ V ++VE+D++R SNWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S ++ A NEKL +++N LYLSWT G+II TG+ +++ Sbjct: 295 RDIVVYTDSDSDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLRTGHSNADN 521
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_XENLA (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16 Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 2 Query: 8 VIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 544 VI ++ E K+M K+ K+ +++D ++GF +I +SS KL+VGHN LD+ H +FF LP EF N FP ++DTK++ ++N F + +L L P +V+ + +S N S HEAGYDA++TG F ++LG Sbjct: 239 VISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQLHEAGYDAYITGLCFISMANYLG 397
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_DANRE (Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15 Identity = 56/205 (27.32%), Postives = 95/205 (46.34%), Query Frame = 2 Query: 14 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625 + I D++ +E + +Q+ E++ ++GF VI +S KL+VGHN LD+ H +F GPLP ++F FP ++DTK++ + ++ F + +L L +P E + ++S + ++ HEAGYDAF+TG F ++LG F S A ++ L N L+L Sbjct: 237 IQISKVDDEERRRREQQKQQREQEELN--DAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTKLMAS----------------TQPFKEIIHNTSLAELHKQLRQKPFRPPTTECPEGLQSYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLTPPKSHISARSKLLEPFYNKLFL 422
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_BOVIN (Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14 Identity = 53/202 (26.24%), Postives = 91/202 (45.05%), Query Frame = 2 Query: 23 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625 E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++DTK++ + ++ F + +L L P +VE + S + S HEAGYDA++TG F ++LG F S A ++ + N L+L Sbjct: 246 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSARSKLIEPFFNKLFL 424
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_PONAB (Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13 Identity = 52/202 (25.74%), Postives = 90/202 (44.55%), Query Frame = 2 Query: 23 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625 E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++DTK++ + ++ F + +L L P +VE + S + S HEAGYDA++TG F ++LG F A ++ + N L+L Sbjct: 246 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 424
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_HUMAN (Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13 Identity = 52/202 (25.74%), Postives = 90/202 (44.55%), Query Frame = 2 Query: 23 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625 E E ++ K K++++++ ++GF VI +++ KL++GHN LD+ H +F+ PLP EF FP ++DTK++ + ++ F + +L L P +VE + S + S HEAGYDA++TG F ++LG F A ++ + N L+L Sbjct: 246 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 424
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_MOUSE (Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13 Identity = 50/180 (27.78%), Postives = 82/180 (45.56%), Query Frame = 2 Query: 8 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 544 VI ++ E K+ ++ EQ+ + ++GF VI +++ KL+VGHN LD+ H +F+ PLP EF FP ++DTK++ + ++ F + +L L P +VE + S + S HEAGYDA++TG F ++LG Sbjct: 233 VISKVDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 391
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARNL_ARATH (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12 Identity = 50/190 (26.32%), Postives = 93/190 (48.95%), Query Frame = 2 Query: 14 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ--QRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSEN 577 V++ S+ DK + +E+KD +K + + GFR V+D +SS +K +V N D I++KF GPLP ++F SS++ FP+++D + S L + + +SL++ F+ + ++A + V++D+ S+ G +A M +FA+ C+ D S+E+ Sbjct: 281 VFMSSKEDKDLFKRELKDLEKEEN----RRVRGFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFFAPVDVEVA------------NQGCPVKLDEGHQSH---------GQNAVMISQLFAKLCTIQKSDLSTIQSNED 445
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PNDC1_PONAB (Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 OS=Pongo abelii GN=PNLDC1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11 Identity = 51/184 (27.72%), Postives = 89/184 (48.37%), Query Frame = 2 Query: 2 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHL 541 + V+V S+ + L D + E + ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +IDTK + + I ++ ++LSK + VL + L P+ E+ + +S V+ HEA YDAF+ G V + +HL Sbjct: 201 EGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSKVYEVL-----------NSDLNPTKNSGPEI--VHASRCEKYVETKCPHEAAYDAFLCGSVLLKV-AHL 368
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PNDC1_HUMAN (Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 OS=Homo sapiens GN=PNLDC1 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11 Identity = 50/184 (27.17%), Postives = 89/184 (48.37%), Query Frame = 2 Query: 2 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHL 541 + V+V S+ + L D + E + ++ GF +L +K +VGHN +D+ H++ KFF PLP + ++F +++ FP +IDTK + + I ++ ++LS+ + VL + L P+ E+ + +S V+ HEA YDAF+ G V + +HL Sbjct: 201 EGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVL-----------NSDLNPTKNSGPEI--VHASRCEKYVETKCPHEAAYDAFLCGSVLLKV-AHL 368 The following BLAST results are available for this feature:
BLAST of FC931480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931480 ID=FC931480; Name=FC931480; organism=Citrus clementina; type=EST; length=718bpback to top |