FC931480

Overview
NameFC931480
Unique NameFC931480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_ARATH (Poly(A)-specific ribonuclease PARN OS=Arabidopsis thaliana GN=PARN PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 7.761e-84
Identity = 145/227 (63.88%), Postives = 186/227 (81.94%), Query Frame = 2
Query:    2 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYLSWTNGEIIKSSTGNRTSES 682
            ++++VY +S+SDK+ LMKE KDE+K  AE  I+++IGFR VIDLL+SEKKLIVGHNCFLDIAH+YSKF GPLP TAE+F++S+N +FP+I+DTKILLN N +L QRMKKSSTSLS AFS LCPQI   S+S+   LQ  V ++VE+D++R SNWN+G KHEAGYDAFMTGC+FAQAC+HLG DFKQ S  ++ A NEKL +++N LYLSWT G+II   TG+  +++
Sbjct:  295 RDIVVYTDSDSDKENLMKEAKDERKRLAERKIQSAIGFRQVIDLLASEKKLIVGHNCFLDIAHVYSKFVGPLPSTAEKFVASINSHFPYIVDTKILLNVNPMLHQRMKKSSTSLSSAFSSLCPQIEFSSRSSDSFLQQRVNIDVEIDNVRCSNWNAGGKHEAGYDAFMTGCIFAQACNHLGFDFKQHSQLDDFAQNEKLEKYINRLYLSWTRGDIIDLRTGHSNADN 521          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_XENLA (Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 55/181 (30.39%), Postives = 86/181 (47.51%), Query Frame = 2
Query:    8 VIVYIESESDKKM-LMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 544
            VI  ++ E  K+M   K+ K+ +++D       ++GF  +I  +SS  KL+VGHN  LD+ H   +FF  LP    EF    N  FP ++DTK++ ++N                 F  +    +L      L   P    +V+  +  +S N  S   HEAGYDA++TG  F    ++LG
Sbjct:  239 VISKVDEEERKRMEQQKQAKEREELDD------AVGFSRIIQAISSSGKLVVGHNMLLDVMHTIHQFFCQLPDELNEFKEVTNCVFPRVLDTKLMASTN----------------PFKEIIYNTSLAELEKRLKEAPFKPPKVDSAEGFQSYNTASEQLHEAGYDAYITGLCFISMANYLG 397          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_DANRE (Poly(A)-specific ribonuclease PARN OS=Danio rerio GN=parn PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 56/205 (27.32%), Postives = 95/205 (46.34%), Query Frame = 2
Query:   14 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEV-DDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625
            + I    D++   +E + +Q+   E++   ++GF  VI  +S   KL+VGHN  LD+ H   +F GPLP   ++F       FP ++DTK++ +                ++ F  +    +L      L  +P      E  + ++S + ++   HEAGYDAF+TG  F    ++LG  F     S   A ++ L    N L+L
Sbjct:  237 IQISKVDDEERRRREQQKQQREQEELN--DAVGFSRVIRAISKSGKLVVGHNMLLDVMHTIHQFCGPLPEELDDFKEVAMTVFPRLLDTKLMAS----------------TQPFKEIIHNTSLAELHKQLRQKPFRPPTTECPEGLQSYDTSTEQLHEAGYDAFITGLCFISMANYLG-SFLTPPKSHISARSKLLEPFYNKLFL 422          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_BOVIN (Poly(A)-specific ribonuclease PARN OS=Bos taurus GN=PARN PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.800e-14
Identity = 53/202 (26.24%), Postives = 91/202 (45.05%), Query Frame = 2
Query:   23 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625
            E E  ++   K  K++++++       ++GF  VI  +++  KL++GHN  LD+ H   +F+ PLP    EF       FP ++DTK++ +                ++ F  +    +L      L   P    +VE  +   S +  S   HEAGYDA++TG  F    ++LG  F     S   A ++ +    N L+L
Sbjct:  246 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLNEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKSHVSARSKLIEPFFNKLFL 424          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_PONAB (Poly(A)-specific ribonuclease PARN OS=Pongo abelii GN=PARN PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 52/202 (25.74%), Postives = 90/202 (44.55%), Query Frame = 2
Query:   23 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625
            E E  ++   K  K++++++       ++GF  VI  +++  KL++GHN  LD+ H   +F+ PLP    EF       FP ++DTK++ +                ++ F  +    +L      L   P    +VE  +   S +  S   HEAGYDA++TG  F    ++LG  F         A ++ +    N L+L
Sbjct:  246 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFSPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 424          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_HUMAN (Poly(A)-specific ribonuclease PARN OS=Homo sapiens GN=PARN PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 52/202 (25.74%), Postives = 90/202 (44.55%), Query Frame = 2
Query:   23 ESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSENLAHNEKLREHVNLLYL 625
            E E  ++   K  K++++++       ++GF  VI  +++  KL++GHN  LD+ H   +F+ PLP    EF       FP ++DTK++ +                ++ F  +    +L      L   P    +VE  +   S +  S   HEAGYDA++TG  F    ++LG  F         A ++ +    N L+L
Sbjct:  246 EEERKRREQQKHAKEQEELND------AVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG-SFLSPPKIHVSARSKLIEPFFNKLFL 424          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARN_MOUSE (Poly(A)-specific ribonuclease PARN OS=Mus musculus GN=Parn PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 50/180 (27.78%), Postives = 82/180 (45.56%), Query Frame = 2
Query:    8 VIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVE-VDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLG 544
            VI  ++ E  K+   ++   EQ+      +  ++GF  VI  +++  KL+VGHN  LD+ H   +F+ PLP    EF       FP ++DTK++ +                ++ F  +    +L      L   P    +VE  +   S +  S   HEAGYDA++TG  F    ++LG
Sbjct:  233 VISKVDEEERKRREQEKYTKEQE-----ELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPRLLDTKLMAS----------------TQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 391          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PARNL_ARATH (Poly(A)-specific ribonuclease PARN-like OS=Arabidopsis thaliana GN=At3g25430 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 50/190 (26.32%), Postives = 93/190 (48.95%), Query Frame = 2
Query:   14 VYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQ--QRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVKHEAGYDAFMTGCVFAQACSHLGIDFKQQSSSEN 577
            V++ S+ DK +  +E+KD +K +     +   GFR V+D +SS +K +V  N   D   I++KF GPLP   ++F SS++  FP+++D    +   S L     +  + +SL++ F+ +  ++A            +    V++D+   S+         G +A M   +FA+ C+    D     S+E+
Sbjct:  281 VFMSSKEDKDLFKRELKDLEKEEN----RRVRGFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSSAFPNVVDLSQFMKEISPLSNISNLPAAMSSLNRFFAPVDVEVA------------NQGCPVKLDEGHQSH---------GQNAVMISQLFAKLCTIQKSDLSTIQSNED 445          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PNDC1_PONAB (Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 OS=Pongo abelii GN=PNLDC1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 51/184 (27.72%), Postives = 89/184 (48.37%), Query Frame = 2
Query:    2 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHL 541
            + V+V   S+  +  L     D +    E  + ++ GF     +L   +K +VGHN  +D+ H++ KFF PLP + ++F  +++  FP +IDTK +  +  I ++      ++LSK + VL           +  L P+     E+  + +S     V+    HEA YDAF+ G V  +  +HL
Sbjct:  201 EGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSARGFSAFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSKVYEVL-----------NSDLNPTKNSGPEI--VHASRCEKYVETKCPHEAAYDAFLCGSVLLKV-AHL 368          
BLAST of FC931480 vs. ExPASy Swiss-Prot
Match: PNDC1_HUMAN (Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 OS=Homo sapiens GN=PNLDC1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 50/184 (27.17%), Postives = 89/184 (48.37%), Query Frame = 2
Query:    2 QNVIVYIESESDKKMLMKEVKDEQKIDAEMSIKASIGFRHVIDLLSSEKKLIVGHNCFLDIAHIYSKFFGPLPLTAEEFISSVNKYFPHIIDTKILLNSNSILQQRMKKSSTSLSKAFSVLCPQIALGSKSTHLSLQPSVKVEVEVDDIRSSNWNSGVK----HEAGYDAFMTGCVFAQACSHL 541
            + V+V   S+  +  L     D +    E  + ++ GF     +L   +K +VGHN  +D+ H++ KFF PLP + ++F  +++  FP +IDTK +  +  I ++      ++LS+ + VL           +  L P+     E+  + +S     V+    HEA YDAF+ G V  +  +HL
Sbjct:  201 EGVVVKKVSKQHRWYLQNTSCDRESCWKENILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPVLIDTKSV--TKDIWKEMNFPRVSNLSEVYEVL-----------NSDLNPTKNSGPEI--VHASRCEKYVETKCPHEAAYDAFLCGSVLLKV-AHL 368          
The following BLAST results are available for this feature:
BLAST of FC931480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PARN_ARATH7.761e-8463.88Poly(A)-specific ribonuclease PARN OS=Arabidopsis ... [more]
PARN_XENLA5.303e-1630.39Poly(A)-specific ribonuclease PARN OS=Xenopus laev... [more]
PARN_DANRE4.489e-1527.32Poly(A)-specific ribonuclease PARN OS=Danio rerio ... [more]
PARN_BOVIN3.800e-1426.24Poly(A)-specific ribonuclease PARN OS=Bos taurus G... [more]
PARN_PONAB1.444e-1325.74Poly(A)-specific ribonuclease PARN OS=Pongo abelii... [more]
PARN_HUMAN1.886e-1325.74Poly(A)-specific ribonuclease PARN OS=Homo sapiens... [more]
PARN_MOUSE4.202e-1327.78Poly(A)-specific ribonuclease PARN OS=Mus musculus... [more]
PARNL_ARATH6.068e-1226.32Poly(A)-specific ribonuclease PARN-like OS=Arabido... [more]
PNDC1_PONAB2.306e-1127.72Poly(A)-specific ribonuclease PARN-like domain-con... [more]
PNDC1_HUMAN8.761e-1127.17Poly(A)-specific ribonuclease PARN-like domain-con... [more]
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Properties
Property NameValue
Genbank descriptionC34105E11EF PostHarvP1 Citrus clementina cDNA clone C34105E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931480 ID=FC931480; Name=FC931480; organism=Citrus clementina; type=EST; length=718bp
ACAAAACGTTATAGTGTATATAGAGTCAGAAAGTGACAAAAAGATGCTGA
TGAAAGAAGTGAAGGATGAACAAAAAATAGATGCAGAGATGAGCATCAAA
GCTTCTATTGGATTTCGCCATGTTATTGACTTGCTTTCCTCAGAGAAGAA
GTTGATTGTTGGTCACAATTGCTTCCTTGATATTGCACATATTTACAGCA
AATTCTTTGGTCCTCTTCCTTTGACTGCTGAAGAATTCATTTCCTCTGTT
AACAAATACTTTCCGCACATCATTGATACCAAAATATTGTTGAATTCAAA
TTCTATTCTTCAACAAAGGATGAAGAAATCTAGCACTTCATTGTCCAAGG
CATTTTCTGTTTTGTGTCCACAAATTGCTCTTGGCTCTAAAAGCACTCAT
CTGTCTCTTCAGCCGTCTGTGAAAGTAGAGGTTGAAGTGGATGATATAAG
GTCATCCAACTGGAACTCTGGAGTGAAGCATGAAGCTGGATATGATGCTT
TTATGACTGGGTGCGTCTTTGCTCAAGCATGCAGTCACCTTGGTATTGAT
TTTAAACAACAGTCATCCTCTGAAAATTTAGCTCACAATGAAAAGCTCCG
GGAACACGTCAACCTTCTGTATCTCAGTTGGACTAATGGAGAGATTATCA
AATCTAGCACTGGAAATAGGACTTCTGAGTCTTTGGCCTCTAATAGCGCA
AAAACACTACCCAAGATT
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