FC931507

Overview
NameFC931507
Unique NameFC931507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12207 contig Ccv1_Contig12207:56..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.050e-83
Identity = 160/230 (69.57%), Postives = 189/230 (82.17%), Query Frame = 2
Query:    2 RVSGRRLSSL-RWNLQQ---TTSAFLSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            R++GRR SSL RW ++    ++SAF+S N+ +    D +++ +S+S S+         S   H  RG S+ ++S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVK+PEWLVV+GVCTHLGCIP
Sbjct:    3 RIAGRRASSLSRWPVRSVAPSSSAFISANHFSSD--DDSSSPRSISPSL--------ASVFLHHTRGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIP 222          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.522e-81
Identity = 156/226 (69.03%), Postives = 176/226 (77.88%), Query Frame = 2
Query:    2 RVSGRRLSSLRWNLQQTTSAFLSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            R++GR+LSS      +++SAF + N                S    SP P S  S      RG S+ ++S     GL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIP
Sbjct:    3 RIAGRKLSSSA--ATRSSSAFFTRNPFT--------FTDDSSSPARSPSPASLASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIP 218          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.522e-81
Identity = 152/210 (72.38%), Postives = 176/210 (83.81%), Query Frame = 2
Query:   50 TTSAFLSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            ++SAF+S N+ +    D +++ +S+S S+         S   H  RG S+ ++S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIP
Sbjct:    9 SSSAFISANHFSSD--DDSSSPRSISPSL--------ASVFLHHTRGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDISLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIP 208          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.121e-80
Identity = 155/226 (68.58%), Postives = 176/226 (77.88%), Query Frame = 2
Query:    2 RVSGRRLSSLRWNLQQTTSAFLSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            R++GR+LSS      +++SAF + N                S    SP P S  S      RG S+ ++S     GL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRT+EDI LANSVD+ SLRDPQ+D+ RVKNPEWLVV+GVCTHLGCIP
Sbjct:    3 RIAGRKLSSSA--AARSSSAFFTRNPFT--------FTDDSSSPTRSPSPTSLASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDEDINLANSVDLGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIP 218          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 6.824e-79
Identity = 155/226 (68.58%), Postives = 180/226 (79.65%), Query Frame = 2
Query:    2 RVSGRRLSSLRWNLQQTTSAFLSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            RV+GRRLSS   +  +++S F + +         +      S    SP P S TS     IRG S+ ++S    LGL+SDLPATVAA+KNP+SKIVYD+ NHERYPPGD SKRAFAYF+LTGGRFVYAS +RLLILKFVLSMSASKDVLALASLEVDLSSIEPG+TVTVKWRGKPVFIRRRT++DI+LANSVD+ +LRDPQ+D+ RVKNPEWLVVVGVCTHLGCIP
Sbjct:    3 RVAGRRLSS---SAARSSSTFFTRS---------SFTVTDDSSPARSPSP-SLTSSFLDQIRGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTDDDIKLANSVDLGTLRDPQQDAERVKNPEWLVVVGVCTHLGCIP 215          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 8.912e-79
Identity = 143/175 (81.71%), Postives = 159/175 (90.86%), Query Frame = 2
Query:  155 SFTSHIPHLIRGLSAEALSLGRDLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            S TS+   +I G S+ ++S   D+GL+ DLP TVAA+KNPTSKIVYDEHNHERYPPGD SKRAFAYF+LTGGRFVYASL+RLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI LANSVD+ SLRDPQ+D+ RVK+PEWLVV+GVCTHLGCIP
Sbjct:   12 SVTSNSFSIISGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDINLANSVDLGSLRDPQQDAERVKSPEWLVVIGVCTHLGCIP 186          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.505e-75
Identity = 156/230 (67.83%), Postives = 179/230 (77.83%), Query Frame = 2
Query:    2 RVSGRRLSS-LRWNLQQTTSAF-LSGNYLNDGGCDAAAAAQSLSRSVNSPLPFSFTSHIPHLIRGLSAEALSLGR--DLGLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            RV+GRRLSS L W      +   L+G  + D   D+A        S++SP  F   S      RG S+    + R  D GL +DLPATVAAVKNP  K+VYDE+NHERYPPGD SKRAFAYF+L+GGRF+YASL+RLL+LKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTE+DI+LANSVDVASLR P++D+ RVKNPEWLVV+GVCTHLGCIP
Sbjct:    3 RVAGRRLSSSLSWRPAAAVARGPLAGAGVPDRDDDSARGRSQPRFSIDSP--FFVAS------RGFSSTETVVPRNQDAGL-ADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEDDIKLANSVDVASLRHPEQDAERVKNPEWLVVIGVCTHLGCIP 223          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_NEUCR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Neurospora crassa GN=NCU06606 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.992e-30
Identity = 64/121 (52.89%), Postives = 89/121 (73.55%), Query Frame = 2
Query:  317 PPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            PP  ++   F+YF++     + A+  +  I +F+ +MSAS DVLA+A +EVDL++I  G  V +KWRGKPVFIR RT  +I+ AN V+VA+LRDP+ D+ RVK PEWLV++GVCTHLGC+P
Sbjct:   63 PP--STNMLFSYFMVGTMGAITAAGAKSTIQEFLKNMSASADVLAMAKVEVDLNAIPEGKNVIIKWRGKPVFIRHRTPAEIEEANKVNVATLRDPETDADRVKKPEWLVMLGVCTHLGCVP 181          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_YEAST (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Saccharomyces cerevisiae GN=RIP1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 66/147 (44.90%), Postives = 101/147 (68.71%), Query Frame = 2
Query:  242 LPATVAAVKNPTSKIVYDEHNHERYPPGDASK-RAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            L A+ +  + P    V  E+N       DA K R++AYF++     + ++  +  +  F+ SM+A+ DVLA+A +EV+L++I  G  V VKW+GKPVFIR RT  +IQ ANSVD+++L+DPQ D+ RVK+P+WL+++G+CTHLGC+P
Sbjct:   27 LLASKSTYRTPNFDDVLKENN-------DADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTATADVLAMAKVEVNLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVP 166          
BLAST of FC931507 vs. ExPASy Swiss-Prot
Match: UCRI_SCHPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Schizosaccharomyces pombe GN=rip1 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.907e-29
Identity = 66/129 (51.16%), Postives = 88/129 (68.22%), Query Frame = 2
Query:  293 DEHNHERYPPGDASKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIP 679
            D   ++    GD S R  +Y ++     + A+  +  +  F+ S SAS DVLA++  EVDLS I  G  + VKW+GKPVFIR RT E+IQ ANSVD+++LRDPQ DS RV+ PEWLV++GVCTHLGC+P
Sbjct:   52 DFSEYQTKSTGDRS-RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKNLVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVP 179          
The following BLAST results are available for this feature:
BLAST of FC931507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI2_TOBAC2.050e-8369.57Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI3_TOBAC9.522e-8169.03Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI1_TOBAC9.522e-8172.38Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI5_TOBAC2.121e-8068.58Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI_SOLTU6.824e-7968.58Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI4_TOBAC8.912e-7981.71Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI_MAIZE3.505e-7567.83Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_NEUCR9.992e-3052.89Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_YEAST1.305e-2944.90Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SCHPO2.907e-2951.16Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34105H02EF PostHarvP1 Citrus clementina cDNA clone C34105H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931507 ID=FC931507; Name=FC931507; organism=Citrus clementina; type=EST; length=681bp
GAGAGTGTCGGGGAGGAGACTCTCATCCTTACGCTGGAACTTGCAGCAGA
CAACCTCCGCCTTCCTATCTGGGAACTATCTTAATGACGGCGGCTGCGAC
GCTGCCGCTGCCGCTCAATCTCTCTCCAGATCCGTCAATTCCCCGCTTCC
TTTCTCTTTCACTTCCCACATTCCGCATCTCATCAGAGGTTTGTCTGCTG
AAGCCCTCAGTCTAGGACGTGATTTGGGTCTGATCTCAGACCTTCCAGCT
ACTGTGGCAGCTGTGAAGAACCCAACTTCAAAAATTGTCTATGATGAGCA
CAATCATGAGCGTTATCCACCTGGTGACGCCAGCAAGCGTGCATTTGCTT
ATTTTATCTTGACAGGTGGCAGGTTTGTGTATGCCTCCTTAATTCGTCTT
TTGATCCTCAAGTTTGTTCTTAGCATGTCTGCGAGCAAAGATGTCCTTGC
CCTTGCCTCCCTTGAGGTTGACCTATCCAGCATTGAACCCGGGACTACTG
TTACAGTCAAGTGGCGTGGGAAGCCAGTTTTCATCAGGCGTCGGACTGAA
GAGGATATTCAGTTGGCTAACAGTGTTGATGTAGCGTCACTCCGGGACCC
ACAGGAAGATTCTGTCAGGGTTAAGAATCCAGAATGGCTTGTCGTTGTTG
GTGTGTGCACACATTTGGGGTGCATTCCTTT
back to top