FC931528

Overview
NameFC931528
Unique NameFC931528
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15348 contig Ccv1_Contig15348:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIFKSTNSDDAN 691
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F      D N
Sbjct:    7 RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNN 115          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_DANRE (Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIFK 667
            RK++ +   E  +T  + Q IM+V+   G+NL E +    E+ L   P KF+K++WIKRG FV+VD       IK+G KV   ++ +L+ + ++ L+K   WPE F+
Sbjct:    7 RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRGDFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQ 107          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_RAT (Probable RNA-binding protein EIF1AD OS=Rattus norvegicus GN=Eif1ad PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIFKSTNSDDAN 691
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N
Sbjct:    7 RKHVVQEVLGEHMVPSDQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNN 115          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIFKSTNSDDAN 691
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N
Sbjct:    7 RKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNN 115          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_PONAB (Probable RNA-binding protein EIF1AD OS=Pongo abelii GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIF 664
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct:    7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIF 664
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct:    7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIF 664
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct:    7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_XENLA (Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  401 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIF 664
            QSI++V+   G+NL EV  A+ E+ LA  P KF+K++WIKRG F++VD       I +G KV   +  +L+ +  R LQK   WPE F
Sbjct:   25 QSIVKVLGSPGNNLHEVETAEGERFLASMPTKFRKNIWIKRGDFLIVD------PIVEGEKVKAEIAFILYKDHQRLLQKEGLWPEGF 106          
BLAST of FC931528 vs. ExPASy Swiss-Prot
Match: EIF1A_DROME (Probable RNA-binding protein EIF1AD OS=Drosophila melanogaster GN=CG31957 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  332 PMKGGRKNLKRAAGEQSLTLQ-DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYETVRALQKSTEWPEIF---------KSTNSDDAN 691
            P    RK+L +   E    L  + Q I +V+S RG+NL EV +  DE  L   P KF+KSMW+KRG F++V+       I++G KV   + K+L  E ++   K+  WP+ F          S N DD++
Sbjct:    6 PSISRRKHLMKEMMEDDYALPTETQQIARVISSRGNNLHEV-ETVDETFLVSMPNKFRKSMWVKRGDFLLVE------PIEEGDKVKAEICKILTPEHIKEYTKAAIWPDKFTKKPVQEEATSQNKDDSD 128          
The following BLAST results are available for this feature:
BLAST of FC931528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EIF1A_BOVIN1.357e-1335.65Probable RNA-binding protein EIF1AD OS=Bos taurus ... [more]
EIF1A_DANRE1.960e-1236.45Probable RNA-binding protein EIF1AD OS=Danio rerio... [more]
EIF1A_RAT2.560e-1234.78Probable RNA-binding protein EIF1AD OS=Rattus norv... [more]
EIF1A_MOUSE2.560e-1234.78Probable RNA-binding protein EIF1AD OS=Mus musculu... [more]
EIF1A_PONAB3.343e-1236.79Probable RNA-binding protein EIF1AD OS=Pongo abeli... [more]
EIF1A_MACFA3.343e-1236.79Probable RNA-binding protein EIF1AD OS=Macaca fasc... [more]
EIF1A_HUMAN3.343e-1236.79Probable RNA-binding protein EIF1AD OS=Homo sapien... [more]
EIF1A_XENLA2.167e-1143.18Probable RNA-binding protein EIF1AD OS=Xenopus lae... [more]
EIF1A_DROME2.167e-1135.38Probable RNA-binding protein EIF1AD OS=Drosophila ... [more]
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Properties
Property NameValue
Genbank descriptionC34106B01EF PostHarvP1 Citrus clementina cDNA clone C34106B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931528 ID=FC931528; Name=FC931528; organism=Citrus clementina; type=EST; length=692bp
GAAGTCTCTAACTCTAATGTCAATATCGTATTCACACAAACACTTGCGGT
ACTTCACCGGCAACCGCAACCCACAAATCCGTAACGCCCAAATCTTCTAA
ATCCATAAGGACCGTAACATCGTCAGCCTGTCGCCATCTGCCTCGCCTAG
GCCTAGTGTCGAAGCCTCGCCTGGGCCCGCTGCTGTCGCTGTACGCTACA
TGCCTCGCCGTCGTCGAAGCCTAGCCTGAGCACGCTGCTGTAGCCGCCCG
CGTCGCCGTCGTCCAGGCCTTGCCTGATTGGACCTTTCTTGCCAGTGATT
TTGTCTTTTGTTTCTGTTTTTCTGGGAGAAACCCATGAAAGGAGGAAGAA
AGAATTTGAAGAGGGCAGCGGGAGAGCAAAGCTTAACACTTCAAGATGGT
CAAAGTATCATGCAAGTGGTGTCTCTTAGAGGTTCTAATCTAATTGAGGT
ATTGGATGCAAAAGATGAGAAATCACTAGCTCTCTTTCCAGCAAAGTTTC
AGAAGAGCATGTGGATAAAACGAGGGAGTTTTGTTGTGGTTGACGAAAGT
GGAAAGGAGAAGGCAATCAAAGATGGCAGCAAGGTGGCTTGTATTGTAAC
CAAAGTTCTCTTTTATGAAACAGTTCGTGCACTTCAGAAATCTACAGAAT
GGCCAGAGATTTTCAAGTCTACCAATTCAGATGATGCTAATG
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