FC931537

Overview
NameFC931537
Unique NameFC931537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931537_ssr70 microsatellite FC931537_ssr70:70..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14202 contig Ccv1_Contig14202:7..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.538e-100
Identity = 180/209 (86.12%), Postives = 189/209 (90.43%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPL+TVQSLEGDMATD + TV LPDVMKASIRPDIV FVHSNISKNSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRA QGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRY           PSLV+ARGHKIETVPE+PLVVSDS E VE+TSAALKVLKQIGAY+DAEKAKDS  IRPGKGKMRNRRYI+RKGPL+V
Sbjct:    9 RPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIV 217
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 348.977 bits (894), Expect = 1.490e-95
Identity = 170/209 (81.34%), Postives = 185/209 (88.52%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPL+T+Q+L+GDM+TD SSTV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRA Q AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPLVV
Sbjct:    7 RPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVV 215
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 2.541e-95
Identity = 170/209 (81.34%), Postives = 184/209 (88.04%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPL+TVQ L+GDM+TD S+TV LPDVM A +RPDIV FVH+ IS NSRQPYAVS+KAGHQTSAESWGTGRAVSRIPRVPGGGTHRA Q AFGNMCRGGRMFAPTKIWRRWHR++NVN KR+           P+LVMARGHKIE VPEMPLVVSDSAE+VEKTSAA+KVLKQIGAY DAEKAK+S GIRPGKGKMRNRRYISRKGPLVV
Sbjct:    8 RPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVV 216
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.700e-71
Identity = 129/209 (61.72%), Postives = 158/209 (75.60%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPLITV S   D    + S V LP V +A IRPDIV FVH  + KN RQPYAVS+KAGHQTSAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRG RMFAPTK WRRWHR++N  Q+R+           P++VM++GH IE +PE+PLVVSDS ES++KT  A+ VL+++ A+ D EK K+S+  R GKGK+RNRR I R+GPL++
Sbjct:    4 RPLITVHS---DKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSVESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRRAIQRRGPLII 209
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 266.544 bits (680), Expect = 9.723e-71
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII 210
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 265.774 bits (678), Expect = 1.659e-70
Identity = 129/209 (61.72%), Postives = 157/209 (75.12%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH +E VPE+PLVV D  ES +KT  A+++LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHCVEEVPELPLVVEDKVESYKKTKEAVQLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII 210
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.659e-70
Identity = 128/209 (61.24%), Postives = 158/209 (75.60%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPLI+V S +G+ +      V +P V KA IRPDIV FVH+N+ KN+RQPYAVS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+L+M++GH+IE +PE+PLVV D  ES +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP V+
Sbjct:    4 RPLISVYSEKGETS---GKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVI 209
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 129/209 (61.72%), Postives = 156/209 (74.64%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII 210
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 129/209 (61.72%), Postives = 156/209 (74.64%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII 210
[Close]
BLAST of FC931537 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 129/209 (61.72%), Postives = 156/209 (74.64%), Query Frame = 1 
Query:   82 RPLITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRADQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYADAEKAKDSQGIRPGKGKMRNRRYISRKGPLVV 708
            RPLI+V S +G+    +   V LP V KA IRPDIV FVH+N+ KN+RQPYAVS  AGHQTSAESWGTGRAV+RIPRV GGGTHR+ QGAFGNMCRGGRMFAPTK WRRWHR++N  QKRY           P+LVM++GH+IE VPE+PLVV D  E  +KT  A+ +LK++ A+ D +K   SQ +R GKGKMRNRR I R+GP ++
Sbjct:    5 RPLISVYSEKGE---SSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCII 210
The following BLAST results are available for this feature:
BLAST of FC931537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RL4_PRUAR1.538e-10086.1260S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH1.490e-9581.3460S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH2.541e-9581.3460S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4_URECA5.700e-7161.7260S ribosomal protein L4 OS=Urechis caupo GN=RPL4 ... [more]
RL4_MOUSE9.723e-7161.7260S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_RAT1.659e-7061.7260S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4B_XENLA1.659e-7061.2460S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4_HUMAN2.166e-7061.7260S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_CANFA2.166e-7061.7260S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4_BOVIN2.166e-7061.7260S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34106B10EF PostHarvP1 Citrus clementina cDNA clone C34106B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931537 ID=FC931537; Name=FC931537; organism=Citrus clementina; type=EST; length=708bp
CATAAAACCCTAGCAACTCAACTCTCCCCCTTTCCCCATACCCCCCCAAA
AAAAAACAAAAAAGCTATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCC
AGTCTTTGGAAGGTGACATGGCCACCGACGCAAGCTCCACCGTCCCTTTG
CCCGACGTCATGAAGGCCTCTATCCGACCCGACATCGTGGGCTTTGTCCA
CTCTAACATCTCCAAGAACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGG
CAGGGCACCAGACCTCCGCCGAATCATGGGGTACCGGTCGCGCCGTCTCC
CGTATTCCCCGTGTCCCCGGAGGCGGTACCCACCGTGCCGACCAGGGAGC
CTTCGGTAACATGTGTCGCGGTGGTCGCATGTTCGCTCCCACAAAGATCT
GGCGCCGATGGCACCGTAAGATCAACGTCAATCAGAAGCGATACGCCATC
GTTTCCGCCATTGCCGCCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGG
TCACAAGATCGAGACTGTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCG
CCGAGAGTGTGGAGAAAACATCAGCTGCCCTTAAAGTTCTGAAGCAGATC
GGTGCATATGCTGACGCCGAGAAGGCGAAGGACAGCCAGGGGATTCGCCC
TGGAAAGGGTAAAATGAGAAATAGGCGTTACATTTCTCGCAAGGGCCCGC
TTGTTGTG
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