FC931544

Overview
NameFC931544
Unique NameFC931544
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931544 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.004e-32
Identity = 88/243 (36.21%), Postives = 131/243 (53.91%), Query Frame = 1
Query:    7 FEKLYDIQHLRTFLPLMLSNSERG-----YLAHSILPKLFKLQSLRVFSLCGYYISELP-DSIGDLRYLRYLNLSGTEIRTLPESVSKLYNXXXXXXXXXXXXXXXCADMGNLTKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFAVGKDNGSGLRELKSLIHLQGTLKISKLENVKDIGDAKEARLDGKKNLKELSLNW----TCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGG 705
            FE L +++ LRTFLPL L+NS R       ++  +LP L +L   RV SL  Y I+ LP D   ++ + R+L+LS TE+  LP+S+  +YN                 D+ NL  L +L+   T  L +MP   G+L  LQTL  F V   +GS + EL  L  L G LKI +L+ V D+ DA EA L+ KK+L+E+   W    + S + ++    + E  V + L+PH+++E+  I  Y G
Sbjct:  539 FEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRL---RVLSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMPRRFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKG 777          
BLAST of FC931544 vs. ExPASy Swiss-Prot
Match: RGA2_SOLBU (Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 88/206 (42.72%), Postives = 116/206 (56.31%), Query Frame = 1
Query:   97 LPKLFKLQSLRVFSLCGYYISELPDSIGDLRYLRYLNLSGTEIRTLPESVSKLYNXXXXXXXXXXXXXXXCADMGNLTKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFAVGKDNGSGLRELKSLIHLQGTLKISKLENVKDIGDAKEARLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGGTNV 714
            LP L K  SLRV +L     ++LP SIGDL +LRYLNL G+ +R+LP+ + KL N                 +   L  L +L    + SL  MP  IG LTCL+TL  F VG+  G  L EL +L +L G++KIS LE VK+  DAKEA L  K NL  LS++W  +  G    E+E E+ VL+ LKPH NL    I G+ G ++
Sbjct:  519 LPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNL-NLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSW--NNFGPHIYESE-EVKVLEALKPHSNLTSLKIYGFRGIHL 720          
BLAST of FC931544 vs. ExPASy Swiss-Prot
Match: DRL21_ARATH (Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 96/239 (40.17%), Postives = 123/239 (51.46%), Query Frame = 1
Query:    7 FEKLYDIQHLRTFLPLMLSNS-ERGYLAHSIL-PKLFKLQSLRVFSLCGYYISELPDSIGDLRYLRYLNLSGTEIRTLPESVSKLYNXXXXXXXXXXXXXXXCADMGNLTKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFAVGKDNGSGLRELKSLIHLQGTLKISKLENVKDIGDAKEARLDGKKNLKELSLNWTCS----TDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGG 705
            F  +   + LRT LP     S E   L   +L P L  L  LR+ SL  Y I+ LP S+  L+ LRYL+LS T+I+ LPE V  L N                  +  L  L  L+   T  L EMP GI KL  LQ L NF +G+ +G+GL ELK L HL+GTL+IS+L+NV    +AK+A L  K  L  L L WT        GS +  A  +  VL ML+PH +L+ F I  Y G
Sbjct:  534 FRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVEMPPGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQG 771          
BLAST of FC931544 vs. ExPASy Swiss-Prot
Match: RGA1_SOLBU (Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.139e-26
Identity = 88/207 (42.51%), Postives = 113/207 (54.59%), Query Frame = 1
Query:  106 LFKLQSLRVFSLCGYYISELPDSIGDLRYLRYLNLSGT-EIRTLPESVSKLYNXXXXXXXXXXXXXXXCADMGNL----TKLHHLNNSNTD--SLEEMPLGIGKLTCLQTLCNFAVGKDNGSGLRELKSLIHLQGTLKISKLENVKDIGDAKEARLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGG 705
            L K  SLRV +L    +++LP SIGDL +LRYL+LSG   IR LP+ + KL N               C  +  L    +KL  L N   D  SL   P  IG LTCL++L  F +GK  G  L ELK+L +L G++ I+KL+ VK   DAKEA L  K NL  L L+W    DG    ++E    VL+ LKPH NL+   I G+GG
Sbjct:  521 LQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHY-------CDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSW--DLDGKHRYDSE----VLEALKPHSNLKYLEINGFGG 713          
BLAST of FC931544 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 83/200 (41.50%), Postives = 108/200 (54.00%), Query Frame = 1
Query:  106 LFKLQSLRVFSLCGYYISELPDSIGDLRYLRYLNLSGTEIRTLPESVSKLYNXXXXXXXXXXXXXXXCADMGNLTKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFAVGKDNGSGLRELKSLIHLQGTLKISKLENVKDIGDAKEARLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGICGYGG 705
            L K  SLRV +L    + +LP SIGDL +LRYL+LS    R+LPE + KL N                     L+ L HL       L   P  IG LTCL+TL  F VG   G  L ELK+L +L G++ I+ LE VK+  DA EA L  K NL+ LS++W    DG +  E++ E+ VL+ LKPH NL+   I  +GG
Sbjct:  523 LKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSW--DNDGPNRYESK-EVKVLEALKPHPNLKYLEIIAFGG 716          
BLAST of FC931544 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.642e-26
Identity = 84/207 (40.58%), Postives = 113/207 (54.59%), Query Frame = 1
Query:   91 SILPKLFK-LQSLRVFSLCGYYISELPDSIGDLRYLRYLNLSGTEIRTLPESVSKLYNXXXXXXXXXXXXXXXCADMGNLTKLHHLNNSNTDSLEEMPLGIGKLTCLQTLCNFAVGKDNGSGLRELKSLIHLQGTLKISKLENVKDIGDAKEARLDGKKNLKELSLNWTCSTDGSSSREAETEMGVLDMLKPHKNLEQFGI---CGY 699
            S  P LFK   SLRV +L      +LP S+GDL +LRYL+LSG +I +LP+ + KL N                     L  L +L   +   L  MP  IG LTCL+TL  F VG+  G  L EL++L +L+G + I+ LE VK+  +AKEA L  K NL  LS++W    D  +  E+E E+ VL+ LKPH NL+   I   CG+
Sbjct:  525 SYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC-PLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSW----DRPNRYESE-EVKVLEALKPHPNLKYLEIIDFCGF 724          
The following BLAST results are available for this feature:
BLAST of FC931544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
R13L1_ARATH9.004e-3236.21Putative disease resistance RPP13-like protein 1 O... [more]
RGA2_SOLBU2.218e-3042.72Disease resistance protein RGA2 OS=Solanum bulboca... [more]
DRL21_ARATH2.218e-3040.17Putative disease resistance protein At3g14460 OS=A... [more]
RGA1_SOLBU1.139e-2642.51Putative disease resistance protein RGA1 OS=Solanu... [more]
RGA4_SOLBU9.642e-2641.50Putative disease resistance protein RGA4 OS=Solanu... [more]
RGA3_SOLBU9.642e-2640.58Putative disease resistance protein RGA3 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionC34106C07EF PostHarvP1 Citrus clementina cDNA clone C34106C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931544 ID=FC931544; Name=FC931544; organism=Citrus clementina; type=EST; length=717bp
GAAAGGTTTGAGAAATTGTATGACATCCAACATTTGCGAACTTTTTTACC
ACTGATGTTGTCAAATAGTGAGCGTGGATACTTGGCTCATAGCATTCTTC
CTAAGTTGTTCAAACTCCAAAGCTTAAGGGTCTTCTCTTTGTGTGGATAT
TACATCTCCGAGCTACCGGATTCAATCGGTGATTTGAGGTATTTAAGGTA
CCTCAACCTATCTGGAACTGAGATTAGAACTCTGCCTGAATCAGTCAGCA
AGCTTTACAATTTGCACACCCTTCTGTTGGAGGGCTGTAAGCTACTGAAG
AAGTTGTGTGCAGACATGGGAAACCTCACCAAATTGCATCATCTCAATAA
TTCAAATACAGATTCGTTGGAGGAAATGCCACTAGGAATTGGTAAGCTGA
CTTGTCTTCAGACGTTGTGTAATTTTGCTGTGGGAAAAGACAATGGTTCT
GGGTTACGAGAGCTAAAGTCATTGATACATCTTCAGGGGACACTTAAAAT
TTCAAAATTAGAGAATGTAAAAGACATTGGTGATGCAAAGGAGGCTCGGT
TGGATGGAAAGAAGAATCTTAAAGAATTATCGCTTAATTGGACTTGCAGC
ACCGATGGTTCATCTTCAAGGGAGGCAGAAACTGAAATGGGCGTGCTTGA
CATGCTCAAACCCCATAAAAATCTGGAACAATTTGGTATCTGTGGCTATG
GAGGTACAAATGTCCAC
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