FC931549

Overview
NameFC931549
Unique NameFC931549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931549_ssr203 microsatellite FC931549_ssr203:203..214. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4325 contig Ccv1_Contig4325:1..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931549 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.238e-16
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 2 
Query:  239 PVLNSFLHWNYDQSTNTVDLAFRHTTTSSSR-WVAWALNPSGQRMAGSQCLVAFQNSTG-RPVAYTTPIGSGSPTLQPGSLSFQVPNISA-TLEGNQWTIFAXXXXXXXXXXXXXVWQ-EGPMNGDTPGAHAMSGDNARS 646
            PVLNS+LH+ Y+ S +++ +AF  T + ++  WVAWA+NP+G +MAGSQ  +A+++  G  PV  T  I S S +L  G L+F   N+ A +L G +  IF              VWQ  G +    PG H    DN  S
Sbjct:   47 PVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYS-SLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGS 185

HSP 2 Score: 23.8682 bits (50), Expect = 1.238e-16
Identity = 9/23 (39.13%), Postives = 13/23 (56.52%), Query Frame = 3 
Query:  174 AQQTCGRQAFNNNKVYSTCTDLP 242
            +QQ C  Q  N+   + +C DLP
Sbjct:   25 SQQACKSQNLNSAGPFDSCEDLP 47
The following BLAST results are available for this feature:
BLAST of FC931549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH1.238e-1637.86Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC34106D02EF PostHarvP1 Citrus clementina cDNA clone C34106D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931549 ID=FC931549; Name=FC931549; organism=Citrus clementina; type=EST; length=662bp
GGCAGACTCTTCATTTGGAAACATTTTGCCTTGGGAAAACACTTCCAGTG
CTTTCGGGAACTTGTTTTCATTTCAAGGATTTGATCTGCTTCCTCTAGAT
CAACATGGTGAACAAAGCTATAGCATGTGCTTTGTTCTTTAGTTTCGTTG
CTGCTCTTTTTGCTTCATCATATGCACAACAAACTTGCGGACGCCAGGCT
TTCAACAACAACAAAGTATACAGTACATGCACAGATCTCCCGTGCTGAAT
TCATTTCTCCACTGGAATTATGATCAGTCAACAAACACCGTCGATCTCGC
CTTCCGGCACACGACCACGAGCTCATCCCGATGGGTGGCATGGGCACTGA
ACCCATCAGGCCAAAGAATGGCAGGCTCACAGTGTCTTGTGGCCTTTCAA
AACTCAACTGGGCGTCCCGTGGCTTATACTACTCCTATTGGTTCTGGCTC
GCCGACGCTGCAACCGGGTAGTTTGAGCTTCCAAGTGCCAAATATTTCAG
CCACTCTTGAGGGAAATCAATGGACTATTTTTGCAACTTTGCAGCTTACT
AACAATTTGTTGTCAACTAACCAAGTTTGGCAAGAAGGTCCAATGAACGG
TGATACTCCTGGCGCCCATGCCATGAGCGGTGATAATGCAAGATCAGTTG
GTACCATTGATT
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