FC931553

Overview
NameFC931553
Unique NameFC931553
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC931553 vs. ExPASy Swiss-Prot
Match: Y3136_ARATH (Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.068e-72
Identity = 132/195 (67.69%), Postives = 161/195 (82.56%), Query Frame = 1 
Query:  100 IEIKIPQQRNYNNINNSCPFPSVLSPN----PATTATVSRLAEKVRTQKPFLDSLLLKAGSVLFRGFDDVKTAKEFNDVVEAFGYEELPYVGGAAPRTNIVGRVFTANESPPDQKIPFHHEMAQVPEFPSKLFFFCEVEPGSGGETPIVLSHIVYERMKHKYPDFVEQLEQHGLIYTRVLGEKDDPSSPIGRGWK 672
            +E  IPQQ++Y     S PFP+V+SP     P    ++    + ++TQK +LDSLL ++G+VLFRGF  V +A +FNDVVEAFG++ELPYVGGAAPRT++VGRVFTANESPPDQKIPFHHEMAQV EFPSKLFF+CE+EP  GGETPIVLSH+VYERMK K+P+FV++LE+HGL+Y RVLGE DDPSSPIGRGWK
Sbjct:    7 VETPIPQQKHYE----SKPFPAVISPPSASIPIPALSLPLFTQTIKTQKHYLDSLLHESGAVLFRGFP-VNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWK 196
The following BLAST results are available for this feature:
BLAST of FC931553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3136_ARATH1.068e-7267.69Clavaminate synthase-like protein At3g21360 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC34106D06EF PostHarvP1 Citrus clementina cDNA clone C34106D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931553 ID=FC931553; Name=FC931553; organism=Citrus clementina; type=EST; length=723bp
GAAGAAACGGCAGCGTCAGCACCAACTCTTGTCTCTTTGATCACCTTGAA
ACTCCGCAGCACTGCAAACAAAAAAACCATCGGCATGGCAGATCATTTCA
TAGAAATCAAAATCCCACAACAAAGAAACTACAACAACATCAACAATTCC
TGTCCTTTCCCTTCAGTTCTCTCTCCAAACCCAGCAACAACGGCAACAGT
TTCCCGTTTGGCTGAAAAAGTCAGAACCCAGAAGCCGTTTCTCGACTCTT
TGTTGCTGAAAGCAGGATCAGTTCTTTTCAGGGGATTTGATGATGTGAAG
ACAGCCAAAGAATTCAACGACGTCGTTGAGGCTTTTGGTTACGAGGAGCT
GCCTTATGTGGGCGGTGCGGCTCCCAGAACCAACATTGTTGGTAGGGTTT
TTACGGCCAATGAGTCCCCGCCTGATCAGAAGATTCCTTTTCACCATGAA
ATGGCTCAGGTTCCTGAGTTCCCATCAAAATTATTCTTCTTTTGTGAAGT
GGAGCCAGGAAGTGGGGGAGAAACTCCAATTGTCCTAAGTCACATTGTCT
ATGAGAGAATGAAGCATAAATACCCTGACTTCGTTGAACAATTAGAACAG
CATGGGTTGATTTATACACGTGTGTTAGGAGAAAAGGATGATCCTTCATC
TCCAATTGGCCGTGGCTGGAAACCACTTTCTTGACTGAAGACAGAGTATG
CTGAAGAAAGGCAGCTAGCTGGG
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