FC931583

Overview
NameFC931583
Unique NameFC931583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12402 contig Ccv1_Contig12402:16..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931583 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.871e-69
Identity = 131/206 (63.59%), Postives = 165/206 (80.10%), Query Frame = 1 
Query:   91 MTSRFGSQSSGVTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLASHPSVNKGQIALNSVQRRHAKVSTGDHVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEASNDSGN*IANQREGATA 708
            M  R+GSQ   V TM V NTPSADLA TNLAYCS +DL  F VP S+LFLA+VA DSF+LSL  H S+  G IALN++QRRHA+VSTGD VS++RF+PPE+F+LA+LT+ELEFVKKG+K+EQVDA LL+ QL++++ NQV+T GQ+  FEYHG NYI TVN A VEGQ+ +N +ERG+++ +TY VFEASN SG  I NQRE A++
Sbjct:    1 MAGRYGSQ---VMTMTVTNTPSADLAFTNLAYCSSSDLRQFSVPGSDLFLANVA-DSFILSLCGHGSIRDGNIALNAIQRRHARVSTGDMVSVSRFVPPENFDLAMLTLELEFVKKGTKSEQVDAALLSTQLKRKYTNQVLTVGQKATFEYHGTNYILTVNRADVEGQDHTNGIERGLLSKDTYIVFEASNASGIKIVNQREAASS 202
The following BLAST results are available for this feature:
BLAST of FC931583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NSF_ARATH1.871e-6963.59Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
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Properties
Property NameValue
Genbank descriptionC34106G04EF PostHarvP1 Citrus clementina cDNA clone C34106G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931583 ID=FC931583; Name=FC931583; organism=Citrus clementina; type=EST; length=721bp
CTGGGATTCAAAAATCACTCACTCTTTTCAGCTCTCTATCTTCGATTTAA
AAAGAAAAACCAGCAATACGGATCGTAGCCGAAAGACGAAATGACAAGTC
GGTTCGGGTCCCAATCATCTGGAGTAACGACGATGAATGTGATCAACACA
CCATCCGCAGATCTTGCCCTCACCAATCTCGCCTACTGCTCGCCCGCGGA
TCTCCTAAACTTCCGCGTGCCGAACTCCAATCTCTTCCTTGCTTCCGTCG
CCGGCGACTCCTTCGTTCTATCACTTGCTTCTCATCCAAGCGTAAATAAA
GGCCAAATTGCTTTGAATTCTGTTCAGCGTCGACATGCTAAGGTTTCCAC
TGGCGATCATGTATCACTCAACAGATTTATTCCTCCAGAGGATTTTAACC
TAGCATTGCTCACTGTTGAATTGGAGTTTGTGAAGAAAGGCTCTAAAAAT
GAACAGGTTGATGCTGTTCTTCTGGCTAACCAACTCCGAAAAAGATTTAT
TAATCAGGTTATGACAGCAGGGCAGAGGGTTGTATTCGAGTATCATGGAA
ATAATTATATATTTACAGTAAATGGAGCTGCAGTAGAGGGTCAAGAAAAA
TCTAATGCACTTGAAAGAGGGATTATTACTAATGAAACTTATTTTGTCTT
TGAAGCAAGTAATGACAGTGGAAATTAGATTGCCAATCAGCGAGAAGGTG
CCACAGCNATATCTTTAGGCA
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