FC931597

Overview
NameFC931597
Unique NameFC931597
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  186 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 611
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  186 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 611
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21
Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3
Query:  186 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 611
            AQ+  +++   +I +L+ ++  D   +  EA++VKE +I EL  LL +  +A +L  LL  +RPF + I KAK A++VR ++D    +   +  ++ LC E ++W ++EKRTFLRQ +EARL +L  +++ Y EAL L + L++
Sbjct:   12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155          
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  192 AKEASNPSDAISMLYRVLDDPSSSSEAL-RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 608
            A ++++   AI +   VL+   S  E +   +E A+T LSDL  +ENR  DL  L+ Q RP  +   KAK+AKIVR +ID  +    +  LQI +  + ++W   EKRTFLRQ +E +L +L  ++  YT+A+ L+ +L+
Sbjct:   13 AVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLL 152          
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  189 QAKEASNPSD---AISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 608
            Q +E  N  D   AI    ++L    S  +   +KE AI  L+ L  +  +   L  LL  +RPFF  I K KT KIVR  ID  + +P      I   KE +QW +   R +LRQR+E +L  L+ E+++Y  AL+ LT+L+
Sbjct:    6 QLEEIGNCQDSNKAIQDYNKILTIQESPDD---IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLL 145          
The following BLAST results are available for this feature:
BLAST of FC931597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSD11_MOUSE6.549e-2136.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_HUMAN6.549e-2136.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
PSD11_BOVIN6.549e-2136.8126S proteasome non-ATPase regulatory subunit 11 OS... [more]
RPN6_SCHPO3.973e-1837.86Probable 26S proteasome regulatory subunit rpn6 OS... [more]
PSD11_DICDI1.413e-1536.3626S proteasome non-ATPase regulatory subunit 11 OS... [more]
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Properties
Property NameValue
Genbank descriptionC34106H08EF PostHarvP1 Citrus clementina cDNA clone C34106H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931597 ID=FC931597; Name=FC931597; organism=Citrus clementina; type=EST; length=685bp
GAACCGAGGTTGCTTGTGATAGTCGTGTCTCTTTCTCTCGTCTCAGTCTC
CTCACTGCTTGTTGAGTTTCGGTTCAGAAACCCTAATCTCCGCACTCATC
TTCTCTTTCTCTCTTCGACCGGAGTTGATTATTCCTGATTGAAATCATGT
CTTCATCATATCTTCCTGCAACAACAGACTCTATTGCGCAGGCTAAAGAA
GCCAGTAATCCATCCGATGCTATATCTATGCTTTACCGTGTACTTGACGA
TCCTTCTTCCTCTTCAGAAGCTCTCCGTGTAAAAGAATTGGCTATCACAG
AACTATCTGACCTTCTTAGACAGGAGAACCGGGCTCAGGATCTTTGCAAC
CTTCTTACTCAGTTGAGACCCTTCTTTTCATTGATCCCTAAGGCTAAAAC
TGCCAAAATTGTAAGAGGAATTATTGATGCTGTTGCCAAGATACCTGGGA
CATCTGAACTCCAAATTGCTCTATGCAAAGAAATGGTACAATGGACCCGT
GCGGAAAAGCGTACATTTCTTAGGCAACGAGTTGAGGCTAGGCTTGCAGC
TCTTTTGATGGAGAGTAGGGAGTACACAGAGGCATTGACCCTGCTTACTA
GCTTGGTCAAAGAGGTGAGGAGATTAGATGACAAACTCCTTCTTGTAGAC
ATAGACTTGTTGGAAAAGTAGCTACATTTTTCATT
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