FC931597
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_MOUSE (26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3 Query: 186 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 611 AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL +RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EARL +L +++ Y EAL L + L++ Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_HUMAN (26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens GN=PSMD11 PE=1 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3 Query: 186 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 611 AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL +RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EARL +L +++ Y EAL L + L++ Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_BOVIN (26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus GN=PSMD11 PE=2 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 6.549e-21 Identity = 53/144 (36.81%), Postives = 91/144 (63.19%), Query Frame = 3 Query: 186 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 611 AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL +RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EARL +L +++ Y EAL L + L++ Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLR 155
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: RPN6_SCHPO (Probable 26S proteasome regulatory subunit rpn6 OS=Schizosaccharomyces pombe GN=rpn6 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18 Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 3 Query: 192 AKEASNPSDAISMLYRVLDDPSSSSEAL-RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 608 A ++++ AI + VL+ S E + +E A+T LSDL +ENR DL L+ Q RP + KAK+AKIVR +ID + + LQI + + ++W EKRTFLRQ +E +L +L ++ YT+A+ L+ +L+ Sbjct: 13 AVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLL 152
BLAST of FC931597 vs. ExPASy Swiss-Prot
Match: PSD11_DICDI (26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium discoideum GN=psmD11 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15 Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = 3 Query: 189 QAKEASNPSD---AISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 608 Q +E N D AI ++L S + +KE AI L+ L + + L LL +RPFF I K KT KIVR ID + +P I KE +QW + R +LRQR+E +L L+ E+++Y AL+ LT+L+ Sbjct: 6 QLEEIGNCQDSNKAIQDYNKILTIQESPDD---IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLL 145 The following BLAST results are available for this feature:
BLAST of FC931597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931597 ID=FC931597; Name=FC931597; organism=Citrus clementina; type=EST; length=685bpback to top |