FC931626

Overview
NameFC931626
Unique NameFC931626
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31
Identity = 69/191 (36.13%), Postives = 101/191 (52.88%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM 669
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG +SD YGRR  +    + T   G+LSAFAP Y                     + + EF+P  +R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P  +  I   ++
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALPLMLFAILCFWL 258          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31
Identity = 73/189 (38.62%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 663
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P   LL+F V
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP---LLLFAV 253          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31
Identity = 73/189 (38.62%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 663
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P   LL+F V
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP---LLLFAV 253          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31
Identity = 73/189 (38.62%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 663
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA+P   LL+F V
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP---LLLFAV 253          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 130.183 bits (326), Expect = 9.726e-30
Identity = 63/191 (32.98%), Postives = 103/191 (53.93%), Query Frame = 1
Query:   82 DHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLI 654
            D    +T+DEA+  +GFG+FQ      +G+ W ++AME+M+LS + PA+  EWG        +TT VF+GM++ +  WG I D +GRR  +    LV  + G++S  +P++                     + + EF+P + R K +V+  +FW  G+V EA LA+ VM    WR L+ LS++P  +  +
Sbjct:   62 DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAV 252          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.726e-30
Identity = 72/189 (38.10%), Postives = 100/189 (52.91%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 663
            + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +    L T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA P   LL+F V
Sbjct:   68 FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAP---LLLFAV 253          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.167e-29
Identity = 71/189 (37.57%), Postives = 99/189 (52.38%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV 663
            + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+  +      T   G+LSAFAP Y                     + + EF+P   R K +++   FW  G+V E  LA  VMP L WRWLL LSA P   LL+F V
Sbjct:   68 FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSAAP---LLVFAV 253          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 56/191 (29.32%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM 669
            +T+++A+  +GFG+F        G     EAME+M+++ V P ++ EW         +TT+VF G +V +  +GL++D YGR   +L   L      LL++FAP+Y                         EF+P   RG  + +   FW  GS+    LA +++P + WRWL+ +++IP  +L++   F+
Sbjct:   32 FTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFI 222          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOPL_DANRE (Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.749e-22
Identity = 58/191 (30.37%), Postives = 90/191 (47.12%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM 669
            YT++EA+  +GFG F  L     G     EAME+M+L+ V P ++ EW         ++T+VF G +V     G I+D YGR   + GG +       L++F+ +Y                    F    EF+P   R   + + S FW  GS+    L   V+P + WRW++  S IP+ VL+   +F+
Sbjct:   49 YTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQVALVSTMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCMVGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIRFSVIPSLVLIGLFMFI 239          
BLAST of FC931626 vs. ExPASy Swiss-Prot
Match: SVOPL_MOUSE (Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.663e-21
Identity = 55/191 (28.80%), Postives = 97/191 (50.79%), Query Frame = 1
Query:   97 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRMSILGGALVTFVAGLLSAFAPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM 669
            +T+++A+  +GFG+F        G     EAME+M+++ V P ++ EW         +TT+VF G +V +  +GL++D YGR   +L   L      LL++F+P+Y                         EF+P   RG  + +   FW  GS+   ++A +V+P + WRWL+ +++IP  +L++   F+
Sbjct:   32 FTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVAFVTTMVFFGYMVSSILFGLLADRYGRWKILLLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGVSGHAQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFI 222          
The following BLAST results are available for this feature:
BLAST of FC931626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SVOP_XENLA8.797e-3136.13Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_PONAB8.797e-3138.62Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN8.797e-3138.62Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN8.797e-3138.62Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
YOU1_CAEEL9.726e-3032.98Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
SVOP_MOUSE9.726e-3038.10Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_RAT2.167e-2937.57Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOPL_HUMAN9.749e-2229.32Putative transporter SVOPL OS=Homo sapiens GN=SVOP... [more]
SVOPL_DANRE9.749e-2230.37Putative transporter SVOPL OS=Danio rerio GN=svopl... [more]
SVOPL_MOUSE1.663e-2128.80Putative transporter SVOPL OS=Mus musculus GN=Svop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107C04EF PostHarvP1 Citrus clementina cDNA clone C34107C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931626 ID=FC931626; Name=FC931626; organism=Citrus clementina; type=EST; length=670bp
TTGAGCTAGGACGTGCCCGTGACTCTGTGAAGGCAATAATTTCAAATTAA
TCTGCATGATACTTGCTATTCAAAGATGGATGATCATAGACTTGTGTACA
CGCTGGATGAAGCACTTACATTCATGGGGTTTGGGAAGTTCCAAGGTCTC
GCGCTTGCTTATTCTGGGCTCGGTTGGTTTTCAGAAGCAATGGAGGTTAT
GATTCTCTCCTTTGTGGGACCTGCAGTGAAGTCTGAGTGGGGATTGTCCT
CAAGTGAAGAGAGCCTTATAACAACTGTTGTTTTTGCTGGAATGTTAGTT
GGCGCATATTCATGGGGCCTTATATCTGACATATATGGAAGAAGGATGAG
TATCCTTGGTGGAGCTTTAGTGACTTTTGTAGCTGGGTTATTAAGTGCTT
TTGCCCCTAACTACATATCATTGTTGATTCTTCGTGGTTTGGCTGGTGCT
GGCCTGGGCAGTGGGCATGTCTTCTTCTCCTGGTTTATGGAATTTGTTCC
TCCTTCAAATCGAGGAAAGTGGATGGTCGTCTTTTCAACTTTCTGGACAT
TTGGGTCGGTTTCTGAGGCTGCACTTGCTTGGATCGTCATGCCAATATTG
ACTTGGAGGTGGCTACTTGCTTTGTCTGCAATACCTGCATTTGTTCTGCT
TATTTTTATTGTTTTCATGC
back to top