FC931652

Overview
NameFC931652
Unique NameFC931652
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.247e-50
Identity = 94/114 (82.46%), Postives = 108/114 (94.74%), Query Frame = 3
Query:  321 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ 662
            CRDD+AAF LKFVAIASIL++G  GVAIPLIG++RRFL+T+G+LFVA KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAMVA+L TLL+DF+GTQYYERKQ
Sbjct:   18 CRDDSAAFLLKFVAIASILLAGAAGVAIPLIGRNRRFLQTEGNLFVAAKAFAAGVILATGFVHMLAGGTEALSNPCLPDFPWSKFPFPGFFAMVAALATLLVDFMGTQYYERKQ 131          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.456e-49
Identity = 91/114 (79.82%), Postives = 106/114 (92.98%), Query Frame = 3
Query:  321 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ 662
            CRDD+AAF LKFVAIASIL++G  GV IPLIG++RRFL+TDG+LFV  KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAM+A+L+TL +DF+GTQYYERKQ
Sbjct:   18 CRDDSAAFLLKFVAIASILLAGAAGVTIPLIGRNRRFLQTDGNLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPDFPWSKFPFPGFFAMIAALITLFVDFMGTQYYERKQ 131          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.760e-32
Identity = 71/100 (71.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:  363 IASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ 662
            +ASILISG  GV+IPL+G     L  +G L    KAFAAGVILATGFVHMLSGGS+AL +PCLPEFPW  FPFP FFAMVA+LLTLL DF+ T YYERKQ
Sbjct:    1 MASILISGAAGVSIPLVGT---LLPLNGGLMRGAKAFAAGVILATGFVHMLSGGSKALSDPCLPEFPWKMFPFPEFFAMVAALLTLLADFMITGYYERKQ 97          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 3
Query:  315 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERK 659
            + C D   A  LK VAI +IL++ ++GVA PL  ++  FL  DG +F+  K FA+G+IL TGF+H+L    E L +PCL + PW KFPF GF AM++ L+TL +D + T  Y +K
Sbjct:   39 DSCIDKTKALPLKIVAIVAILVTSMIGVAAPLFSRYVTFLHPDGKIFMIIKCFASGIILGTGFMHVLPDSFEMLSSPCLEDNPWHKFPFTGFVAMLSGLVTLAIDSIATSLYTKK 153          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.373e-23
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 3
Query:  321 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQA 665
            C + A A  LK +AI  ILI+ ++GV  PL  ++  FL+ DG++F   K FA+G+IL TGF+H+L    E L + CL E PW KFPF GF AM++ L+TL +D + T  Y  K A
Sbjct:   34 CVNKAKALPLKVIAIFVILIASMIGVGAPLFSRNVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFLAMLSGLITLAIDSMATSLYTSKNA 148          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.898e-23
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 3
Query:  315 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYER 656
            +D  + A A   K  AI S+L +G++GV  PL+GK    LK + + F  TKAFAAGVILATGF+H+L  G E L +PCL    W +FPF GF AMVA++LTL +D   T Y+ +
Sbjct:   37 DDEANKAGAKKYKIAAIPSVLAAGVIGVMFPLLGKFFPSLKPETTFFFVTKAFAAGVILATGFMHVLPEGYEKLTSPCLKGEAW-EFPFTGFIAMVAAILTLSVDSFATSYFHK 149          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.982e-22
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 3
Query:  321 CRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQA 665
            C + A A  LK VAI +IL + ++GV  PL  ++  FL+ DG+ F+  K F++G+IL TGF+H+L    E L + CL + PW KFPF GF AM++ L+TL +D + T  Y  K +
Sbjct:   37 CINKAKALPLKIVAIVAILTTSLIGVTSPLFSRYISFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDSFEMLSSKCLSDNPWHKFPFAGFVAMMSGLVTLAIDSITTSLYTGKNS 151          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.192e-21
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 3
Query:  339 AFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERK 659
            A  LK  +IA +L++G VGV++PLIGK    L+ +  +F   KAFAAGVIL TGFVH+L    E L +PCL +    KFPF GF AM++++ TL++D   T YY+R+
Sbjct:   47 ATKLKLGSIALLLVAGGVGVSLPLIGKRIPALQPENDIFFMVKAFAAGVILCTGFVHILPDAFERLSSPCLEDTTAGKFPFAGFVAMLSAMGTLMIDTFATGYYKRQ 153          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.882e-21
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 3
Query:  315 EDCRDDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLD-FVGTQYYE 653
            +D  + A A   K  AI ++LI+GI+GV  PL+GK    L+ +   F  TKAFAAGVILATGF+H+L    E L++PCL    W +FPF GF AM+A++LTL +D F  + +Y+
Sbjct:   42 DDHENKAGARKYKIAAIPTVLIAGIIGVLFPLLGKVFPSLRPETCFFFVTKAFAAGVILATGFMHVLPEAYEMLNSPCLTSEAW-EFPFTGFIAMIAAILTLSVDTFATSSFYK 154          
BLAST of FC931652 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.423e-20
Identity = 52/113 (46.02%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  327 DDAAAFNLKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCL-PEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ 662
            + A+A   K +A  SILI+G+ GV +P+ G     LKT+ + F+  KAFAAGVILATGFVH+L   +E+L + CL  E PW  FP  G  AM AS+LT+L++   + Y  R +
Sbjct:   42 EKASALKYKIIAFFSILIAGVFGVCLPIFG-----LKTESNFFMYVKAFAAGVILATGFVHILPDATESLTSSCLGEEPPWGDFPMTGLVAMAASILTMLIESFASGYLNRSR 149          
The following BLAST results are available for this feature:
BLAST of FC931652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ZIP4_ARATH2.247e-5082.46Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH1.456e-4979.82Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP9_ARATH2.760e-3271.00Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
ZIP8_ARATH1.123e-2546.09Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
IRT1_ARATH1.373e-2346.09Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
ZIP5_ARATH8.898e-2349.12Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
IRT2_ARATH1.982e-2243.48Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
ZIP1_ARATH2.192e-2148.60Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP3_ARATH4.882e-2147.37Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP12_ARATH2.423e-2046.02Probable zinc transporter 12 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC34107E07EF PostHarvP1 Citrus clementina cDNA clone C34107E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931652 ID=FC931652; Name=FC931652; organism=Citrus clementina; type=EST; length=676bp
GATCAGCCATTTTCATTTTCATTTCATTTTCATTTCATTTTCGGACGCCA
ATACCATTGCGTTTGTCTACGACGGGGCCCGATTCCTTCTCGTGCTTGCT
GATTAAACCCCATCACCATCTTCCATACTAATTATTAAAAAAAAAAAAAA
AAGCTTTTCAGAATCTCGTTTCTCTTGCCATGTCATTCATCGAGGATCTC
TGGGGATTGCGTTTTTTTGATCATTTTAGATCAAAGACGAAAGCTTTTTC
CGGTTCCTTTTTGCATGCGGTTTCTGATTCGATGATGAAGTCGAGCTGCG
AGTCCTCGGACCGCGAAGACTGCCGTGACGACGCGGCGGCCTTTAATCTC
AAATTCGTCGCCATAGCCTCCATCCTCATTTCCGGAATCGTCGGCGTCGC
CATTCCGTTAATTGGGAAGCACCGCCGGTTCTTAAAAACCGACGGCAGTC
TGTTCGTCGCTACTAAAGCGTTTGCGGCCGGTGTCATTTTGGCTACGGGT
TTTGTTCACATGTTATCTGGAGGATCCGAGGCGTTGGATAACCCGTGTTT
GCCCGAATTCCCGTGGTCCAAGTTCCCGTTCCCTGGATTTTTCGCCATGG
TGGCTTCGCTTCTGACGCTGCTTCTGGACTTCGTGGGGACACAATATTAC
GAGAGGAAACAGGCCTGACCCGGGCT
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