FC931682

Overview
NameFC931682
Unique NameFC931682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931682 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.782e-63
Identity = 130/217 (59.91%), Postives = 154/217 (70.97%), Query Frame = 1
Query:   76 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRYSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFTLF 714
            ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DR SPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFEG YGQVKL Q+V+P K F  F
Sbjct:    5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTF 214          
BLAST of FC931682 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.508e-60
Identity = 121/186 (65.05%), Postives = 137/186 (73.66%), Query Frame = 1
Query:  160 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELFVYEINERDRYSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFTLF 714
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DR SPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YGQVKL Q+V+P K F  F
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTF 210          
BLAST of FC931682 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.093e-53
Identity = 118/216 (54.63%), Postives = 141/216 (65.28%), Query Frame = 1
Query:   76 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---KNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRYSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFTLF 714
            +SA SL+ I                  LLG   SF    +NL +S+   D S  SS   K N+T         S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P K F  F
Sbjct:    3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTF 209          
BLAST of FC931682 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.516e-52
Identity = 107/186 (57.53%), Postives = 131/186 (70.43%), Query Frame = 1
Query:  157 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELFVYEINERDRYSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKXFTLF 714
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P K F  F
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTF 210          
The following BLAST results are available for this feature:
BLAST of FC931682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH5.782e-6359.91Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH3.508e-6065.05Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.093e-5354.63Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH3.516e-5257.53Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34107H01EF PostHarvP1 Citrus clementina cDNA clone C34107H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931682 ID=FC931682; Name=FC931682; organism=Citrus clementina; type=EST; length=717bp
GACGCTCCATTTCATTTCTTGAATCATCGCCATCCAGATAACTTTACTCA
TTCAATATTCTGCAAATCAATAATGGCCTCTGCAAGCTCTCTCAAGCCCA
TCTCTTATTCTCTGAACCTCCCTAACTCGAGATCCTCTTCTTCCGAAACC
CAAAGGTTGCTAGGTTTCAAATCATCTTTTTCCTCTCATCATCGAAACCT
CAGTCTCTCAACAACCCACCAAGATGTCTCAAGAAGAAGCTCCAAGAACA
ACGTCACCACCAAAGCTTTCTTCTTCAACAAACCCAGCAGCCAACCAGAT
TCTTCCAGGCCTGCTAATAATAAGGTTCAAGAACTGTTCGTGTATGAGAT
CAACGAGCGGGACAGATACAGCCCGGCAATTCTGAAGCTAAGCCAAAAGC
CTGAACATCTCACAATCGGCGACCTTGTGCCCTTCACGAACAAGCTCTAC
ACCGGCGACTTACAGAAGCGCATTGGCATCACGGCGGGGCTCTGCGTGTT
GATCAAGCACGAACCGGAGAAGAAGGGTGACCGGTTTGAAGCGATTTACA
GCTTCTACTTCGGTGACTACGGTCACATATCCGTGCAGGGAGCTTATTTG
ACTTACGAAGACACGTACTTGGCCGTCACCGGTGGCTCCGGGATCTTTGA
GGGCGTGTACGGACAAGTCAAGTTGCATCAAATTGTTTTCCCTTACAAGN
TGTTTACACTTTTTACT
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