FC931683

Overview
NameFC931683
Unique NameFC931683
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:939..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 359.377 bits (921), Expect = 9.947e-99
Identity = 189/221 (85.52%), Postives = 201/221 (90.95%), Query Frame = 2
Query:    2 AVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKET 664
            +VE++NCKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAAL+APGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLGNASKVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK T
Sbjct:  266 SVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALRAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGNASKVVLTKETSTIVGDGSTQDAVKKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKAT 486          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.100e-97
Identity = 187/219 (85.39%), Postives = 200/219 (91.32%), Query Frame = 2
Query:    2 AVEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 658
            +VE++NCKLLLVDKKITNARDL+ VLEDAIRG YPILIIAEDIEQEALATLVVNKLRG LKIAALKAPGFGERKSQYLDDIAILTG TVIR+EVGL+LDK GKEVLG+A+KVVLTK+T+TIVGDGSTQDAV KRV QI+ LIE AEQDYE+EKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK
Sbjct:  266 SVEFDNCKLLLVDKKITNARDLVGVLEDAIRGGYPILIIAEDIEQEALATLVVNKLRGTLKIAALKAPGFGERKSQYLDDIAILTGATVIREEVGLSLDKAGKEVLGHAAKVVLTKETSTIVGDGSTQDAVQKRVTQIKNLIEQAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIK 484          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 4.179e-97
Identity = 186/220 (84.55%), Postives = 202/220 (91.82%), Query Frame = 2
Query:    5 VEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKET 664
            VE+ENCKLLLVDKKITNARDLIN+LEDAIR  +PI+IIAEDIEQEALATLVVNKLRG+LKIAALKAPGFGERKSQYLDDIAILTGGTVIR+EVGL LDK  KEVLGNA+KVVLTKDTTTIVGDGSTQ+AV+KRV+QI+  IE AEQ+YE+EKL+ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL+SKVDAIK+T
Sbjct:  261 VEFENCKLLLVDKKITNARDLINILEDAIRSGFPIVIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLTLDKADKEVLGNAAKVVLTKDTTTIVGDGSTQEAVNKRVSQIKNQIEAAEQEYEKEKLSERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDT 480          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 1.756e-95
Identity = 183/219 (83.56%), Postives = 198/219 (90.41%), Query Frame = 2
Query:    8 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKET 664
            EYENCKLLLVDKKITNARDLINVLE+AIRG YPILIIAEDIEQEALATLVVNKLRG+LKI A+KAPGFGERK+QYLDDIAILTGGTVIRDEVGL LDK    VLG A+KVVLTK++TTIVGDGSTQ+ V+KRVAQI+ LIE AEQDYE+EKLNERIAKL+GGVAVIQVGAQTETELKEKKLRVEDALNATKAA          CTLLRL++KVDAIK+T
Sbjct:  167 EYENCKLLLVDKKITNARDLINVLEEAIRGQYPILIIAEDIEQEALATLVVNKLRGSLKICAIKAPGFGERKTQYLDDIAILTGGTVIRDEVGLTLDKADNTVLGTAAKVVLTKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQDYEKEKLNERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAKVDAIKDT 385          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: RUBB_CHLRE (RuBisCO large subunit-binding protein subunit beta-1 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.554e-80
Identity = 151/217 (69.59%), Postives = 179/217 (82.49%), Query Frame = 2
Query:    8 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 658
            EYENCK+LLVDKKI+ ARD+I +LE AIRG YP+LI+AE++EQEALATLVVNKLRG LK+ A+KAPGFGER+S YL+DIAILTGGTV+ DE+G++L++    VLG A+K+ +TK+ TT+VGDGST   V+ RV QIR L    +QDYEREKL ERIA+LSGGVA+IQVGAQTETELKEKKLRVEDALNAT+AA          CTLLRLS KVD IK
Sbjct:   98 EYENCKILLVDKKISTARDIITILESAIRGNYPLLIMAEEVEQEALATLVVNKLRGTLKVVAIKAPGFGERRSSYLEDIAILTGGTVVGDEMGVSLEQATDAVLGTAAKITITKERTTVVGDGSTAADVAARVKQIRNLQMQTDQDYEREKLQERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATRAAVEEGVVPGGGCTLLRLSEKVDVIK 314          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.039e-63
Identity = 124/218 (56.88%), Postives = 163/218 (74.77%), Query Frame = 2
Query:    5 VEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 658
            V++EN ++L+ DKKI++ +DL+ VLE   R    +LIIAEDIE EALATLVVNK RG L +AA+KAPGFG+R+   L DIAILTGG +I +EVGL+L+ V  +++G   K+ + KD TTIV DG T + V KR+AQIR  +  ++ DY++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ LS+KV+ +K
Sbjct:  211 VDFENARILITDKKISSIQDLVPVLEKVARAGQSLLIIAEDIEGEALATLVVNKARGVLNVAAVKAPGFGDRRKAMLQDIAILTGGQLISEEVGLSLEMVDLDMMGIGRKISINKDNTTIVADGGTAEEVKKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELK 428          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.039e-63
Identity = 122/217 (56.22%), Postives = 161/217 (74.19%), Query Frame = 2
Query:    8 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 658
            E EN +LL+V+KKI++ +DL+ +LE   R   P+LIIAED+E EALATLVVNKLRG L + A+KAPGFGER+   L DIA+LTGG VI ++VGL LDKV  E+LG A KV ++KD TTIV + +    V KRV Q+R  ++  + +Y++EKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+  ++++K
Sbjct:  212 EIENARLLIVNKKISSLQDLVGILEQVARAGQPLLIIAEDLEGEALATLVVNKLRGVLNVVAIKAPGFGERRQAMLQDIAVLTGGQVISEDVGLTLDKVDLEMLGTARKVTISKDNTTIVSEAANAGDVGKRVEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVK 428          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.156e-63
Identity = 125/217 (57.60%), Postives = 160/217 (73.73%), Query Frame = 2
Query:    8 EYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIK 658
            EYEN  LL+   KI++ +DL+ +LE   R   P+L+IAED+E EALATLVVN+LRG L   A+KAP FG+R+   L+DIAILTGG +I ++VG+ LDKV  +++G A K+ +TKD TTIV DGST+ AV KRVAQIR  +E  + +Y+REKL ERIAKL+GGVAVI+VGA TETELK++KLR+EDALNAT+AA           TLL LS  + A K
Sbjct:  213 EYENAYLLITSNKISSLQDLVPILERVAREGRPLLVIAEDVEGEALATLVVNRLRGVLNAVAVKAPAFGDRRKAMLEDIAILTGGQLISEDVGIKLDKVTLDMMGVARKITVTKDKTTIVTDGSTKAAVEKRVAQIRKQLETTDSEYDREKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFK 429          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.149e-62
Identity = 123/219 (56.16%), Postives = 160/219 (73.06%), Query Frame = 2
Query:    5 VEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKE 661
            VE EN ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+
Sbjct:  211 VELENVRILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKK 429          
BLAST of FC931683 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.149e-62
Identity = 123/219 (56.16%), Postives = 160/219 (73.06%), Query Frame = 2
Query:    5 VEYENCKLLLVDKKITNARDLINVLEDAIRGAYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKE 661
            VE EN ++L+ DKKI++ ++L+ VLE   R   P+LIIAED+E +ALATLVVNK RG L +AA+KAPGFGER+   L DIAILT G +I +E+GL+LD    E LG A K+ + KD TTIV   +T+  + KR+AQIR  +E  + +Y+ EKL ERIAKL+GG+AVI+VGA TETELK++KLR+EDALNATKAA           TL+ L+SKVD IK+
Sbjct:  211 VELENVRILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGFGERRKALLQDIAILTDGQLISEEIGLSLDTASLEALGTAQKITIEKDNTTIVAGNTTKPEIQKRIAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIKK 429          
The following BLAST results are available for this feature:
BLAST of FC931683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH9.947e-9985.52RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA1.100e-9785.39RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA4.179e-9784.55RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE1.756e-9583.56RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_CHLRE3.554e-8069.59RuBisCO large subunit-binding protein subunit beta... [more]
CH601_TRIEI1.039e-6356.8860 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH601_ACAM11.039e-6356.2260 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_SYNJB5.156e-6357.6060 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH602_ANAVT1.149e-6256.1660 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH602_ANASP1.149e-6256.1660 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]

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Properties
Property NameValue
Genbank descriptionC34107H02EF PostHarvP1 Citrus clementina cDNA clone C34107H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931683 ID=FC931683; Name=FC931683; organism=Citrus clementina; type=EST; length=675bp
GGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGATAAAAAGATTA
CCAATGCAAGGGACCTTATCAACGTTTTGGAAGATGCGATTAGAGGTGCA
TACCCAATTTTGATTATTGCAGAAGATATTGAGCAAGAAGCACTGGCAAC
TCTTGTCGTGAACAAGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAG
CTCCTGGTTTTGGAGAGCGCAAGAGCCAGTACCTTGACGACATTGCTATT
TTGACTGGAGGAACTGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAA
AGTTGGCAAGGAGGTCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGG
ATACCACCACCATTGTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAA
CGAGTGGCGCAAATCAGAACTCTAATTGAGAACGCTGAGCAAGACTATGA
AAGGGAGAAGCTTAATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTG
TCATACAGGTTGGAGCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTG
AGAGTCGAAGATGCTCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTAT
CGTAGTTGGTGGCGGATGTACTCTACTGAGACTCTCATCTAAGGTGGATG
CCATTAAGGAAACCCCTTGATATGA
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