FC931698

Overview
NameFC931698
Unique NameFC931698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_BOVIN (Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.249e-14
Identity = 41/117 (35.04%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGK 697
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F      D N +
Sbjct:    7 RKHVVKEVLGEHMVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKDNNDR 117          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_PONAB (Probable RNA-binding protein EIF1AD OS=Pongo abelii GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGK 697
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F        N +
Sbjct:    7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEVAEKHNNNR 117          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_DANRE (Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 39/107 (36.45%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK 667
            RK++ +   E  +T  + Q IM+V+   G+NL E +    E+ L   P KF+K++WIKRG FV+VD       IK+G KV   ++ +L+ + ++ L+K   WPE F+
Sbjct:    7 RKHVVKEVLEDYVTPTEDQQIMRVLGSNGNNLHEAVTGSGERFLLSMPTKFRKNIWIKRGDFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWPEGFQ 107          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_RAT (Probable RNA-binding protein EIF1AD OS=Rattus norvegicus GN=Eif1ad PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 691
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N
Sbjct:    7 RKHVVQEVLGEHMVPSDQQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNN 115          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_MOUSE (Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.539e-12
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 691
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL    VR+LQK   WPE F        N
Sbjct:    7 RKHVVQEVLGEHMVPSDHQQIVKVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWPEAFSEVAEKQNN 115          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_MACFA (Probable RNA-binding protein EIF1AD OS=Macaca fascicularis GN=EIF1AD PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 664
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct:    7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_HUMAN (Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.010e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  347 RKNLKRAAGEQSLTLQDGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 664
            RK++ +    + +   D Q I++V+   G+NL EV  A+ ++ L   P+K++K++WIKRG F++VD       I++G KV   ++ VL  + VR+LQK   WPE F
Sbjct:    7 RKHVVKEVLGEHIVPSDQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAF 106          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_XENLA (Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  401 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 664
            QSI++V+   G+NL EV  A+ E+ LA  P KF+K++WIKRG F++VD       I +G KV   +  +L+ +  R LQK   WPE F
Sbjct:   25 QSIVKVLGSPGNNLHEVETAEGERFLASMPTKFRKNIWIKRGDFLIVD------PIVEGEKVKAEIAFILYKDHQRLLQKEGLWPEGF 106          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_DROME (Probable RNA-binding protein EIF1AD OS=Drosophila melanogaster GN=CG31957 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  332 PMKGGRKNLKRAAGEQSLTLQ-DGQSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF---------KSTNSDDAN 691
            P    RK+L +   E    L  + Q I +V+S RG+NL EV +  DE  L   P KF+KSMW+KRG F++V+       I++G KV   + K+L  E ++   K+  WP+ F          S N DD++
Sbjct:    6 PSISRRKHLMKEMMEDDYALPTETQQIARVISSRGNNLHEV-ETVDETFLVSMPNKFRKSMWVKRGDFLLVE------PIEEGDKVKAEICKILTPEHIKEYTKAAIWPDKFTKKPVQEEATSQNKDDSD 128          
BLAST of FC931698 vs. ExPASy Swiss-Prot
Match: EIF1A_XENTR (Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis GN=eif1ad PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  401 QSIMQVVSLRGSNLIEVLDAKDEKSLALFPAKFQKSMWIKRGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 664
            Q I++V+   G+NL EV  ++ E+ LA  P KF+K++WIKRG F++VD       I +G KV   +  +L+ +  R LQK   WPE F
Sbjct:   25 QRIVKVLGSPGNNLHEVETSEGERFLASMPTKFRKNIWIKRGDFLIVD------PIAEGEKVKAEIAFILYKDHQRLLQKEGLWPEGF 106          
The following BLAST results are available for this feature:
BLAST of FC931698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
EIF1A_BOVIN6.249e-1435.04Probable RNA-binding protein EIF1AD OS=Bos taurus ... [more]
EIF1A_PONAB1.179e-1234.19Probable RNA-binding protein EIF1AD OS=Pongo abeli... [more]
EIF1A_DANRE1.179e-1236.45Probable RNA-binding protein EIF1AD OS=Danio rerio... [more]
EIF1A_RAT1.539e-1234.78Probable RNA-binding protein EIF1AD OS=Rattus norv... [more]
EIF1A_MOUSE1.539e-1234.78Probable RNA-binding protein EIF1AD OS=Mus musculu... [more]
EIF1A_MACFA2.010e-1236.79Probable RNA-binding protein EIF1AD OS=Macaca fasc... [more]
EIF1A_HUMAN2.010e-1236.79Probable RNA-binding protein EIF1AD OS=Homo sapien... [more]
EIF1A_XENLA1.303e-1143.18Probable RNA-binding protein EIF1AD OS=Xenopus lae... [more]
EIF1A_DROME1.303e-1135.38Probable RNA-binding protein EIF1AD OS=Drosophila ... [more]
EIF1A_XENTR8.446e-1140.91Probable RNA-binding protein EIF1AD OS=Xenopus tro... [more]
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Properties
Property NameValue
Genbank descriptionC34108A05EF PostHarvP1 Citrus clementina cDNA clone C34108A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931698 ID=FC931698; Name=FC931698; organism=Citrus clementina; type=EST; length=702bp
GAAGTCTCTAACTCTAATGTCAATATCGTATTCACACAAACACTTGCGGT
ACTTCACCGGCAACCGCAACCCACAAATCCGTAACGCCCAAATCTTCTAA
ATCCATAAGGACCGTAACATCGTCAGCCTGTCGCCATCTGCCTCGCCTAG
GCCTAGTGTCGAAGCCTCGCCTGGGCCCGCTGCTGTCGCTGTACGCTACA
TGCCTCGCCGTCGTCGAAGCCTAGCCTGAGCACGCTGCTGTAGCCGCCCG
CGTCGCCGTCGTCCAGGCCTTGCCTGATTGGACCTTTCTTGCCAGTGATT
TTGTCTTTTGTTTCTGTTTTTCTGGGAGAAACCCATGAAAGGAGGAAGAA
AGAATTTGAAGAGGGCAGCGGGAGAGCAAAGCTTAACACTTCAAGATGGT
CAAAGTATCATGCAAGTGGTGTCTCTTAGAGGTTCTAATCTAATTGAGGT
ATTGGATGCAAAAGATGAGAAATCACTAGCTCTCTTTCCAGCAAAGTTTC
AGAAGAGCATGTGGATAAAACGAGGGAGTTTTGTTGTGGTTGACGAAAGT
GGAAAGGAGAAGGCAATCAAAGATGGCAGCAAGGTGGCTTGTATTGTAAC
CAAAGTTCTCTTTTATGAACAAGTTCGTGCACTTCAGAAATCTACAGAAT
GGCCAGAGATTTTCAAGTCTACCAATTCAGATGATGCTAATGGAAAGTTG
GA
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