FC931716

Overview
NameFC931716
Unique NameFC931716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931716_ssr177 microsatellite FC931716_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12851 contig Ccv1_Contig12851:658..1352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.133e-60
Identity = 125/216 (57.87%), Postives = 146/216 (67.59%), Query Frame = 3
Query:   96 MADEHKHEE------PA-----GESVKEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            MA+EHKH+E      PA      ES+ +KI+EKIH                              +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV            +CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F  LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL
Sbjct:    1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTL 216          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.525e-60
Identity = 119/200 (59.50%), Postives = 137/200 (68.50%), Query Frame = 3
Query:   96 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLF 692
            M ++HKHEE    S+ EKI EKIHGH                       K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WV            +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR   LLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLF
Sbjct:    1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLF 196          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.525e-60
Identity = 122/198 (61.62%), Postives = 141/198 (71.21%), Query Frame = 3
Query:   96 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            MA+EHKHEE    S+ EKI+EKIHGH                     LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+              H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR F +LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL
Sbjct:    1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTL 191          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.253e-59
Identity = 121/212 (57.08%), Postives = 144/212 (67.92%), Query Frame = 3
Query:   96 MADEHKHEEPAG-----------ESVKEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            MADEHKHEE +            ES+ EK++EKIH                          LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WV            +CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR    LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL
Sbjct:    1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTL 212          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.098e-55
Identity = 109/198 (55.05%), Postives = 136/198 (68.69%), Query Frame = 3
Query:   96 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            MA+E +   P  ES+ EKI+EKIH H                     +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWV            +CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTL 195          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.070e-54
Identity = 111/198 (56.06%), Postives = 133/198 (67.17%), Query Frame = 3
Query:   96 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            MA+E +      ES+ EKI +KIH H                     LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWV            VCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTL 195          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.219e-38
Identity = 73/151 (48.34%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  237 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            +   ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L   T IW+            +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSL 194          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 71/145 (48.97%), Postives = 98/145 (67.59%), Query Frame = 3
Query:  255 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWV            VC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTV 188          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  246 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W             +CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+    L ++A GRD   F      L++VSI+G++ NF+ L
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNL 166          
BLAST of FC931716 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 3
Query:  255 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 689
            +LF R++ +H++LGGG  ADV LWR K +S G++    A W+            +   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS  +F TL
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTL 151          
The following BLAST results are available for this feature:
BLAST of FC931716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLA_ARATH1.133e-6057.87Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH2.525e-6059.50Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH2.525e-6061.62Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.253e-5957.08Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.098e-5555.05Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH2.070e-5456.06Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.219e-3848.34Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH1.262e-3548.97Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH8.483e-2435.14Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH6.721e-2132.41Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC34108B11EF PostHarvP1 Citrus clementina cDNA clone C34108B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931716 ID=FC931716; Name=FC931716; organism=Citrus clementina; type=EST; length=694bp
GAGTTATTACTTCGTTGAGAGTTGGCGAGCTTCTTTCATTTCTCAAAGTT
AAAAGGTTTGAAAACACCGACTGAGGGATTTGTACAGAGAGCGAGATGGC
TGACGAGCATAAACACGAGGAACCAGCCGGTGAATCGGTGAAGGAGAAGA
TAACGGAGAAGATCCACGGCCACGATTCGTCGTCGTCGTCATCGTCATCT
GACTCCGATGATGATAAGAAGTCATCTGCATCCTCCCTCAAGACCAAAGT
ATTTCGTCTCTTCGGAAGAGAAAAGCCTGTTCACAAGGTTCTTGGTGGCG
GAAAACCTGCGGATGTTTTCTTATGGAGGAACAAGAAGATTTCAGCAGGA
GTACTTGGTGGGGCTACTGCAATATGGGTTCTTTTTGAATTGCTTGAGTA
CCACCTTCTAACTCTTGTCTGTCACTGCCTGATTGTTGCACTTGCGGTGC
TTTTCTTGTGGTCTAATGCTTCCACCTTCATTAACAAGTCTCCACCACGC
ATTCCAGAAGTATATATCCCTGAGGAACCAGTTTTACAGTTGGCCTCTGC
ACTTAGGTTTGAGATCAATAGGGCCTTCCCTCTTCTGAGGGAAATAGCAT
CTGGAAGAGATCTGAAGAAGTTTCTCTCGGTGATTGCTGGCTTGTGGGTT
GTGTCGATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTTCTA
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