FC931742

Overview
NameFC931742
Unique NameFC931742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931742_ssr149 microsatellite FC931742_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15458 contig Ccv1_Contig15458:161..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.899e-35
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 2
Query:  359 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            M   CCF ++   +             + G++K+GFSLVKGKANHPMEDYHVA F+ +Q HELGLFAIYDGH+G++VPAYLQK LFSNILKE EFWVDP+RSI+KAY
Sbjct:    1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLFSNILKEGEFWVDPRRSIAKAY 107          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34
Identity = 73/108 (67.59%), Postives = 82/108 (75.93%), Query Frame = 2
Query:  359 MDSLCCFNAS-YSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            M  LCCF +S Y  +V            N G +KFG+SLVKGKANHPMEDYHV+KFV++ G+ELGLFAIYDGHLGE VPAYLQKHLFSNILKEE+F  DPQRSI  AY
Sbjct:    1 MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKIDGNELGLFAIYDGHLGERVPAYLQKHLFSNILKEEQFRYDPQRSIIAAY 108          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.214e-28
Identity = 61/107 (57.01%), Postives = 77/107 (71.96%), Query Frame = 2
Query:  359 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            M  +CC + S +++V              G +K+GFSL+KGK+NH MEDYHVAKF    G+ELGLFAI+DGH G+ V AYLQKHLFSNILK+ EF VDP+R+I+KAY
Sbjct:    1 MPKICC-SRSATQVVVAQKSNSGKGRNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFSNILKDGEFLVDPRRAIAKAY 106          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.303e-26
Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 2
Query:  359 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVK--FGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            M   CCF A  S+                G VK  +GF LV+G  NHPMEDYHVA+  + +G+ELGLFAI+DGHLG+TVPAYLQK+LF+NIL EEEF   P R+I KAY
Sbjct:    1 MSRFCCFGAGCSEFSGHASTSSGKGKGIQGQVKVSYGFYLVRGMTNHPMEDYHVAELAEEKGNELGLFAIFDGHLGDTVPAYLQKNLFANILNEEEFLTQPDRAIIKAY 109          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  452 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            +  GF  VKGK++HPMEDY V++F +L+GHELGLFAI+DGHLG  V  YLQ +LF NILKE++FW D + +I  AY
Sbjct:   34 ITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTENAIRNAY 109          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  452 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            VK G+ LVKGK+NHPMEDY VA++ Q   H+LGLFAI+DGHLG TVP +L+ HLF NILK+ EF  +PQ +I  AY
Sbjct:   37 VKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLFDNILKQPEFLSNPQAAIRNAY 112          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.231e-21
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  452 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            V  GF LV+GK+ H MEDYHVA++   + HELGLFAI+DGHLG++VP+YL+ +LF NILKE  FW +PQ +I  AY
Sbjct:   69 VTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAY 144          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.491e-21
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  452 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            +  G+  VKGKA HPMEDY V++F ++ GH+LGLFAI+DGHLG  V  YLQ +LF NILKE++FW D + +I  AY
Sbjct:   30 IAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTKNAIRNAY 105          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.478e-21
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  452 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            +  GF LVKGKA H MEDY VAKF ++  +ELGLFAI+DGHL   +P YL  HLF NILKE  FW +P+++I KAY
Sbjct:   40 ITHGFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAIFDGHLSHEIPDYLCSHLFENILKEPNFWQEPEKAIKKAY 115          
BLAST of FC931742 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  497 MEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFSNILKEEEFWVDPQRSISKAY 679
            MED+ VA    ++GH LGL+AI+DGH G  V  YLQ HLF NIL + +FW +P+++I +AY
Sbjct:    1 MEDFIVADTKTVKGHNLGLYAIFDGHSGSDVADYLQNHLFDNILSQPDFWRNPKKAIKRAY 61          
The following BLAST results are available for this feature:
BLAST of FC931742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
P2C09_ARATH7.899e-3562.62Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C10_ARATH1.032e-3467.59Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C17_ARATH3.214e-2857.01Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C41_ORYSJ2.303e-2655.05Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C58_ARATH7.668e-2260.53Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C62_ORYSJ2.231e-2163.16Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C44_ORYSJ2.231e-2160.53Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C20_ARATH6.491e-2157.89Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C39_ARATH8.478e-2160.53Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
P2C28_ARATH8.498e-1352.46Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC34108E02EF PostHarvP1 Citrus clementina cDNA clone C34108E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931742 ID=FC931742; Name=FC931742; organism=Citrus clementina; type=EST; length=679bp
TCTCCTTTACAAAAAGGTTTCAAATCTTCTCCTCTCTCCCTCTTTTTTTT
TTTTCCCCCCCTTTCTAATCTCTGTTTATAATAATCTATCTCTTTATTCA
ATTGCTTGCACAAACTAATAAACACAAATTATATTAGAAAAAAAAGAGGA
AGAAGAAGAAACATCAAAAACCCCCCACGGAACAAAGATCACCAACAAGG
AGCATCAGTTGATTTTTAGCTTTGAATTGATCAACGAGAGATTGAGAATT
CTGGGAGCTGGGCTTGATTTAAAATTTTGGAGTAGAGTTGTTTACCAAGA
GTTTGATGTTGAAATTTTAGTTGAATTAGTTGGAACTGCTTTGCTGAATT
TTTATTTTATGGATAGCTTATGCTGCTTTAATGCTTCGTACTCGAAGCTT
GTGGGAGGACGCTCGTCATCTACTGGTAAGGGGAGAAGCAATGTTGGATT
AGTCAAGTTTGGTTTCAGCTTGGTAAAAGGGAAAGCTAATCATCCCATGG
AGGATTATCATGTTGCAAAATTTGTGCAACTTCAAGGTCATGAATTAGGG
TTGTTTGCTATTTATGACGGCCATTTGGGAGAAACTGTGCCTGCCTACCT
ACAAAAGCATTTGTTTTCCAACATCCTAAAGGAGGAAGAGTTTTGGGTTG
ACCCCCAGAGATCTATCTCTAAAGCTTAT
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