FC931758

Overview
NameFC931758
Unique NameFC931758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9885 contig Ccv1_Contig9885:3..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.408e-90
Identity = 162/204 (79.41%), Postives = 182/204 (89.22%), Query Frame = 2
Query:   89 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGDT++ASYYH   P+TNTAVGAELTH
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTH 204          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 3.358e-84
Identity = 151/204 (74.02%), Postives = 172/204 (84.31%), Query Frame = 2
Query:   89 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            M KGPGLY+EIGKKARDLLYKDYQSDHKF++TTY+  GV ITSSG KKG+LFLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH  SPLT+TAVGAE+ H
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNH 204          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.511e-76
Identity = 139/204 (68.14%), Postives = 163/204 (79.90%), Query Frame = 2
Query:   89 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            MVKGPGLY++IGKKARDLLYKDY SD KFT++TY+  GVAITSSG KKGELFL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH  +PL+NTAVG +++H
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISH 204          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 280.411 bits (716), Expect = 6.348e-75
Identity = 140/204 (68.63%), Postives = 162/204 (79.41%), Query Frame = 2
Query:   89 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            MVKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHI +PL NTAVGAE++H
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSH 204          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 262.692 bits (670), Expect = 1.370e-69
Identity = 129/201 (64.18%), Postives = 157/201 (78.11%), Query Frame = 2
Query:   98 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            GPGLY EIGKKARDLLY+DYQ+DHKFT+TTYTS GVAIT++  KK +L   ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHI +  + TAVGAELTH
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTH 202          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 255.373 bits (651), Expect = 2.187e-67
Identity = 126/204 (61.76%), Postives = 154/204 (75.49%), Query Frame = 2
Query:   89 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            MVKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY I SP  +T VGAE++H
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISH 202          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.035e-66
Identity = 126/202 (62.38%), Postives = 154/202 (76.24%), Query Frame = 2
Query:   98 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            GPGLYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHI    + TAVGAELTH
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTH 203          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 7.051e-58
Identity = 113/205 (55.12%), Postives = 144/205 (70.24%), Query Frame = 2
Query:   89 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELTH 700
            MV   GLY++IGKK RDLLYKDY +  KF +TT +  GVAIT++G +K E    ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+    + TAVGAEL+H
Sbjct:    1 MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSH 205          
BLAST of FC931758 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 61/209 (29.19%), Postives = 88/209 (42.11%), Query Frame = 2
Query:  101 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIVPD---QRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIASPLTNTAVGAELT 697
            P  Y+++GK ARD+  K Y     K  V T ++ GV  T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F         ++SGKV+  Y+ EY  +   + F  A P               G  ++FD+A    TK N  + Y   D      +ND G     S Y   S    TAV    T
Sbjct:    3 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSATGVEFTTSGTSNTDSGKVNGSLETKYKWGEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAVNLAWT 210          
The following BLAST results are available for this feature:
BLAST of FC931758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VDAC2_SOLTU1.408e-9079.41Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU3.358e-8474.02Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA1.511e-7668.14Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH6.348e-7568.63Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ1.370e-6964.18Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH2.187e-6761.76Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT7.035e-6662.38Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE7.051e-5855.12Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_XENLA1.702e-1129.19Voltage-dependent anion-selective channel protein ... [more]
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Properties
Property NameValue
Genbank descriptionC34108F06EF PostHarvP1 Citrus clementina cDNA clone C34108F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931758 ID=FC931758; Name=FC931758; organism=Citrus clementina; type=EST; length=702bp
GAGGGTTTTGATTTCATAATCTTCCTCCAGCTGAAATAATCAAAACTGAT
ATTTCTCAGCGTTTCCTTTCCATTTTCTCTGGAGAATCATGGTGAAAGGC
CCCGGGCTCTACTCTGAAATCGGCAAGAAAGCCCGAGATCTTCTCTACAA
GGACTACCAGAGCGACCACAAGTTCACTGTCACTACTTACACGTCAGCTG
GAGTCGCGATAACTTCGAGTGGTGTTAAGAAAGGTGAGCTTTTTTTGGCT
GATGTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGATGTTAAAGT
TGATACTAACTCTAATCTTTTTACAACCATCACTGTCGATGAGCCTGCTC
CTGGACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAGAGATCTGGC
AAGGTGGAACTCCAATATCAGCATGAATATGCTGGAATAAGCACTGGCAT
TGGATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTGGTTGGAAACA
ATTCTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCCACTGGCAAC
TTCACCAAGTGCAATGCGGGGCTGAGCTATACACATACTGACCTCATTGC
TTCCCTGACATTGAATGACAAAGGTGACACCCTTAATGCTTCCTACTACC
ACATTGCAAGCCCACTGACCAATACCGCTGTTGGGGCGGAGCTGACCCAT
AG
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