FC931787

Overview
NameFC931787
Unique NameFC931787
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 325.865 bits (834), Expect = 1.219e-88
Identity = 162/188 (86.17%), Postives = 165/188 (87.77%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLT 673
            MKFN+ANPTTGCQKKLEI DDQKLRAFFDKR+SQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GKKVSKAPKIQRLVTPLT
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRLVTPLT 188
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.715e-88
Identity = 162/188 (86.17%), Postives = 165/188 (87.77%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLT 673
            MKFNIANPTTGCQKKLEI DDQKLRAF+DKRISQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK  SKAPKIQRLVTPLT
Sbjct:    1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGKTCSKAPKIQRLVTPLT 188
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 5.120e-87
Identity = 159/188 (84.57%), Postives = 164/188 (87.23%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTPLT 673
            MKFN+ANPTTGCQKKLEI DDQKLRAF+DKRISQEV+GDALGEEFKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+VSKAPKIQRLVTPLT
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVSKAPKIQRLVTPLT 188
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.041e-55
Identity = 115/186 (61.83%), Postives = 135/186 (72.58%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTP 182
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.041e-55
Identity = 115/186 (61.83%), Postives = 135/186 (72.58%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTP 182
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.041e-55
Identity = 115/186 (61.83%), Postives = 135/186 (72.58%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTP 182
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.041e-55
Identity = 115/186 (61.83%), Postives = 135/186 (72.58%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKPRTKAPKIQRLVTP 182
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.776e-55
Identity = 115/186 (61.83%), Postives = 134/186 (72.04%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+       K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKDGKKPRTKAPKIQRLVTP 182
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_APLCA (40S ribosomal protein S6 OS=Aplysia californica GN=RPS6 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.750e-55
Identity = 115/188 (61.17%), Postives = 135/188 (71.81%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKV-SKAPKIQRLVTPL 670
            MK NI+ P TGCQK +E+ D++KLR F+DKRIS E++ D LG+E+KGYV +I GG DKQGFPMKQGVLT  RVRLLL +   C+                 CIV  +LSVL+LVI+KKGE D+PGLTD   PR  GPKRASKIRKLFNLSKEDDVR+YV   RR    + GKK  SKAPKIQRLVTP+
Sbjct:    1 MKLNISYPATGCQKLIEVDDEKKLRPFYDKRISAELSADCLGDEWKGYVVRISGGNDKQGFPMKQGVLTATRVRLLLDKNHSCY--RPRRTGERKRKSVRGCIVDSNLSVLSLVIIKKGEQDIPGLTDKTIPRRLGPKRASKIRKLFNLSKEDDVRQYV--VRRPLPERDGKKAKSKAPKIQRLVTPV 184
[Close]
BLAST of FC931787 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.816e-55
Identity = 112/186 (60.22%), Postives = 135/186 (72.58%), Query Frame = 2 
Query:  110 MKFNIANPTTGCQKKLEIGDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKIQRLVTP 667
            MK NI+ P TGCQK +E+ D++KLR F++KR++ EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI++KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T +  K  +KAPKIQRLVTP
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTNGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLTKEGKKPRTKAPKIQRLVTP 182
The following BLAST results are available for this feature:
BLAST of FC931787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS62_ARATH1.219e-8886.1740S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS6_ASPOF2.715e-8886.1740S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS61_ARATH5.120e-8784.5740S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_RAT1.041e-5561.8340S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE1.041e-5561.8340S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA1.041e-5561.8340S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN1.041e-5561.8340S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN1.776e-5561.8340S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_APLCA6.750e-5561.1740S ribosomal protein S6 OS=Aplysia californica GN... [more]
RS6_ICTPU8.816e-5560.2240S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34201B11EF PostHarveN Citrus clementina cDNA clone C34201B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931787 ID=FC931787; Name=FC931787; organism=Citrus clementina; type=EST; length=673bp
GAAATAAGTTTTGGATCCCCCAAAACCCTAATCCTCAGAGAAGGAGTCGG
AGTAGTACTAGAGCCGAAGCGCTTCTCATCTCTTTAGCCACAGACTCTAT
CGAACAAAGATGAAGTTCAATATCGCAAATCCCACCACTGGGTGCCAGAA
GAAGCTCGAAATTGGCGATGACCAGAAACTTCGAGCATTTTTTGACAAGA
GGATCTCTCAAGAAGTCAATGGAGATGCTCTTGGCGAGGAGTTCAAGGGA
TATGTGTTCAAGATTATGGGTGGCTGCGACAAGCAAGGTTTTCCCATGAA
GCAAGGAGTGCTGACTCCCGGCCGTGTTCGTCTTCTGCTCCACCGTGGTA
CCCCTTGCTTTCGTGGGTATGGCAGGAGAGATGGAGAGCGCAGGAGGAAG
TCTGTTCGTGGATGCATAGTTAGTCCAGATCTCTCCGTGTTGAATTTGGT
CATTGTGAAAAAGGGAGAACATGACCTTCCTGGACTTACCGATACAGAAA
AGCCCAGAATGAGAGGTCCCAAGAGAGCATCGAAGATCAGGAAGTTGTTC
AACCTTTCCAAGGAGGATGATGTTAGGAAGTACGTTAACACCTATCGTAG
GACCTTCACAACAAAATCTGGTAAGAAGGTTAGCAAGGCACCGAAAATTC
AGAGGTTGGTAACTCCTTTGACT
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