FC931832

Overview
NameFC931832
Unique NameFC931832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14112 contig Ccv1_Contig14112:12..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931832 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 64/204 (31.37%), Postives = 96/204 (47.06%), Query Frame = 2
Query:  149 IQIQRDDTTFDAYVVG-KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGVPYXVHIYPGSAHAFMN 727
            ++ +++      Y+   K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +A  LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V            +GV   V +Y G  HAF+N
Sbjct:    5 VEFEKNGVKVRGYIATPKWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN 203          
BLAST of FC931832 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 59/202 (29.21%), Postives = 95/202 (47.03%), Query Frame = 2
Query:  149 IQIQRDDTTFDAYVVGKEDA-PGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGVPYXVHIYPGSAHAFMN 727
            ++ +++      Y+   + A P ++V  EWWG++  + N      +L + GF A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   +V            +GV   V ++ G  HAF+N
Sbjct:    5 VEFEKNGVKVRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEV---IDIAKTVWKNGVDVQVKVFSGVTHAFLN 203          
BLAST of FC931832 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 52/177 (29.38%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  209 PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGL--DTAEAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGVPYXVHIYPGSAHAFMN 727
            P +VVV E  G++  I++ A ++++   G+ AL PD      G   +  + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +           +   Y  +IYPG  H F N
Sbjct:   82 PAVVVVHENRGLNPYIEDVARRVAKA--GYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN 251          
The following BLAST results are available for this feature:
BLAST of FC931832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
USF_AQUPY4.442e-1831.37Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
DLHH_AQUAE1.580e-1529.21Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
YGHX_ECOLI2.135e-1229.38Putative uncharacterized protein yghX OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionC34201F09EF PostHarveN Citrus clementina cDNA clone C34201F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931832 ID=FC931832; Name=FC931832; organism=Citrus clementina; type=EST; length=729bp
GGAGTAGATAATGCTAGCAGCTGCTTCGAGAATCTTGAGCAGATCAACTC
CGCTTCTTAAGCCCTCTCTCGCAAGGACTCACTTTCCCGCCGGTTATCGC
TTTGCAGTCAGATCAATGGCAGACTCTGCAGCTTCGCCCTTCAGGAAAAT
CCAGATTCAGAGAGATGATACTACTTTTGATGCATATGTGGTTGGCAAAG
AAGACGCCCCTGGGATTGTTGTAGTTCAGGAGTGGTGGGGTGTTGATTTT
GAGATCAAGAACCATGCTGTCAAAATCTCCCAACTAAACCCTGGATTCAA
GGCACTTATACCAGATTTATATCGGGGAAAGGTTGGTTTGGATACTGCTG
AAGCACAGCACTTGATGAGTGGTCTTGATTGGCCAGGTGCTGTCAAGGAT
ATCCACGCTTCAGTTAATTGGCTTAAGGCAAATGGTTCCAAGAAGGTTGG
CGTGACTGGATATTGCATGGGAGGTGCTCTCGCTATTGCAAGTTCTGTCT
TAGTTCCTGAGGTTGATGCTGTTGTTTCATTTTATGGGGTTCCCCCACCT
GAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTCAAGCTCATTTTGG
GGAGCTTGACAATTTTGTTGGCTTTTCAGATGTGAAAACTGCCAAAGCAT
TGGAGGAAAAGCTGAAAGCATCCGGTGTTCCATATGANGTACATATTTAT
CCTGGCAGTGCACATGCTTTCATGAACAT
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