FC931835

Overview
NameFC931835
Unique NameFC931835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4897 contig Ccv1_Contig4897:19..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931835 vs. ExPASy Swiss-Prot
Match: MAF1_SOLLC (MFP1 attachment factor 1 OS=Solanum lycopersicum GN=MAF1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 53/86 (61.63%), Postives = 61/86 (70.93%), Query Frame = 3
Query:  336 TFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 593
            +F IWPP QRTRDAVI RLIE+L+TPS+LSKRYG +P DEA  TAR IE                GIE+LQVYSKEISKRM++ VK
Sbjct:   25 SFSIWPPTQRTRDAVINRLIESLSTPSILSKRYGTLPQDEASETARLIEEEAFAAAGSTASDADDGIEILQVYSKEISKRMIDTVK 110          
BLAST of FC931835 vs. ExPASy Swiss-Prot
Match: WPP2_ARATH (WPP domain-containing protein 2 OS=Arabidopsis thaliana GN=WPP2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.940e-21
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  213 PQQESKK-LDAINDIPQQESKKLDARNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 593
            P+ ES   + A+ D   QE+   D   D+ ++   +     ++ RIWPP Q+TRDAV+ RLIETL+T S+LSKRYG + +D+A   A+ IE                GI++L++YSKEISKRMLE+VK
Sbjct:   17 PESESSTTISAMTDPTSQEAASKDT--DLTKEAESEKKPGGISLRIWPPTQKTRDAVLNRLIETLSTESILSKRYGTLKSDDATTVAKLIEEEAYGVASNAVSSDDDGIKILELYSKEISKRMLESVK 142          
BLAST of FC931835 vs. ExPASy Swiss-Prot
Match: WPP1_ARATH (WPP domain-containing protein 1 OS=Arabidopsis thaliana GN=WPP1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.162e-19
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  294 IPQQESKKL-NFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 593
            +P  E++K  N   ++ RIWPP Q+TRDAVI RLIETL+T S+LSKR+G++ ++EA   A+ IE+               GIE+L+ YSKEISKRMLE+VK
Sbjct:   26 LPTTETEKNPNPVTISLRIWPPTQKTRDAVINRLIETLSTESILSKRFGSLESEEASSVAKSIEDEAYAIASATVFGDDDGIEILKAYSKEISKRMLESVK 126          
BLAST of FC931835 vs. ExPASy Swiss-Prot
Match: WPP3_ARATH (WPP domain-containing protein 3 OS=Arabidopsis thaliana GN=WPP3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = 3
Query:  255 PQQESKKLDA------RNDIPQQESKKLNFSNLTFRIWPPAQRTRDAVIARLIETLTTPSVLSKRYGAMPTDEADFTARFIENXXXXXXXXXXXXXXXGIEVLQVYSKEISKRMLEAVK 593
            PQ ES+  +       R+D   + +K+     + F +WPP Q++RD V+  +I+TL+T S+LS +YG +  +EA   A+ IE                GI+ L+VY  E S+RM+E+ +
Sbjct:   17 PQLESRSDETSCLQKHRSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILSYKYGTIKPEEASAVAKSIEE--KAYDIASRFVSSDGIKNLEVYGIETSERMIESAE 133          
The following BLAST results are available for this feature:
BLAST of FC931835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MAF1_SOLLC3.564e-2261.63MFP1 attachment factor 1 OS=Solanum lycopersicum G... [more]
WPP2_ARATH3.940e-2142.97WPP domain-containing protein 2 OS=Arabidopsis tha... [more]
WPP1_ARATH2.162e-1950.50WPP domain-containing protein 1 OS=Arabidopsis tha... [more]
WPP3_ARATH8.235e-1132.77WPP domain-containing protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC34201F12EF PostHarveN Citrus clementina cDNA clone C34201F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931835 ID=FC931835; Name=FC931835; organism=Citrus clementina; type=EST; length=693bp
TTTTTTTTTTAAGAAAATAATATTAATAATATAAAAAATTTGAAAATTTG
AAACTTCAAAATACAAATAGATAGAAATAGCAAATGTCCTCCGACTCTGA
GATCGCCTCTGCCTCAGCCACAGCCACAGCCACAGCCACACACCCAAACC
GAATAGAGCAACAACAGGCAATGGAAACCGAAACGCATCTTCAAGCTTCT
CAAAACGACATTCCCCAGCAGGAATCAAAGAAACTCGACGCCATAAACGA
CATTCCCCAGCAGGAATCAAAGAAACTCGACGCCAGAAACGACATTCCCC
AGCAGGAATCAAAGAAACTCAACTTCAGCAACCTGACCTTCCGCATATGG
CCACCCGCACAGCGCACGCGCGACGCGGTGATCGCTCGCCTTATCGAGAC
TCTCACCACTCCCTCCGTTCTCTCCAAACGCTACGGCGCCATGCCGACGG
ACGAGGCCGATTTCACCGCCCGCTTCATTGAGAACGATGCCTTTTCCGTC
GCCGATGCCGCCGCCTCTGCTGAGGACGATGGTATCGAGGTCCTTCAGGT
CTATTCCAAGGAGATCAGCAAGCGCATGCTCGAAGCCGTGAAGTCACGCT
CTTCTGCTGCTGCTTCTGGCATCTCTAGTGGTGTAGACGATACAACCAGT
CCTGCTCAACCTGCCGGAAGTCCCAACGAGAAATCTGTTCGTC
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