FC931837

Overview
NameFC931837
Unique NameFC931837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_NEUCR (40S ribosomal protein S7 OS=Neurospora crassa GN=rps-7 PE=3 SV=2)

HSP 1 Score: 311.612 bits (797), Expect = 1.966e-84
Identity = 155/190 (81.58%), Postives = 169/190 (88.95%), Query Frame = 2
Query:    2 SPSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQSGAEF 571
            SPSRQNPSELETA+AGAL+DLESNT DLKA+LRPLQFVSARE+EVGHGKKAI++FVPVP L  FH++QQRLTRELEKKFSDRHVL VA RRILPRPKRS  SR T  QKRPRSRTLTAVHD+IL+DLVYPVEIVGKR R KEDGSKTLKVILDEKERG VD+RLD Y  VYRRLTG++V FEFP   AE+
Sbjct:   13 SPSRQNPSELETAVAGALYDLESNTADLKAALRPLQFVSAREIEVGHGKKAIVIFVPVPSLQGFHRVQQRLTRELEKKFSDRHVLIVASRRILPRPKRSSRSRNTLKQKRPRSRTLTAVHDAILTDLVYPVEIVGKRLRVKEDGSKTLKVILDEKERGSVDYRLDTYSAVYRRLTGKNVLFEFPLVSAEY 202          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_SCHPO (40S ribosomal protein S7 OS=Schizosaccharomyces pombe GN=rps7 PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.419e-58
Identity = 111/187 (59.36%), Postives = 142/187 (75.94%), Query Frame = 2
Query:    8 SRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQSGAE 568
            S   P+E +  +A  L+DLES+++D+   LRPLQ  SAREVEVG GKKAI+VFVP PLL  FHK Q RLTRELEKKF+DRHV+F+AQRRILP+P R    ++  TQKRPRSRTLTAVH++IL D+V+P EI+GKRTR   DG KT+KV LD ++   VD++L ++  VY +LTG++V FEFP +  E
Sbjct:   11 SSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGR----KSRVTQKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFPVATGE 193          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.959e-56
Identity = 109/184 (59.24%), Postives = 141/184 (76.63%), Query Frame = 2
Query:    5 PSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            P+ + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG G+KAII+FVPVP L +F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SRT   QKRPRSRTLTAVHD+IL DLVYP EIVG+R R K DGS+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   11 PNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGAGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRK--SRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFPE 191          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.591e-56
Identity = 109/184 (59.24%), Postives = 141/184 (76.63%), Query Frame = 2
Query:    5 PSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            P+ + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG G+KAII+FVPVP L +F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SRT   QKRPRSRTLTAVHD+IL DLV+P EIVGKR R K DGS+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   11 PNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRK--SRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.591e-56
Identity = 109/184 (59.24%), Postives = 141/184 (76.63%), Query Frame = 2
Query:    5 PSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            P+ + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG G+KAII+FVPVP L +F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SRT   QKRPRSRTLTAVHD+IL DLV+P EIVGKR R K DGS+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   11 PNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRK--SRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.591e-56
Identity = 109/184 (59.24%), Postives = 141/184 (76.63%), Query Frame = 2
Query:    5 PSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            P+ + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG G+KAII+FVPVP L +F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SRT   QKRPRSRTLTAVHD+IL DLV+P EIVGKR R K DGS+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   11 PNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRK--SRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.591e-56
Identity = 109/184 (59.24%), Postives = 141/184 (76.63%), Query Frame = 2
Query:    5 PSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            P+ + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG G+KAII+FVPVP L +F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SRT   QKRPRSRTLTAVHD+IL DLV+P EIVGKR R K DGS+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   11 PNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRK--SRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 6.591e-56
Identity = 109/184 (59.24%), Postives = 141/184 (76.63%), Query Frame = 2
Query:    5 PSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            P+ + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG G+KAII+FVPVP L +F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SRT   QKRPRSRTLTAVHD+IL DLV+P EIVGKR R K DGS+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   11 PNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRK--SRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPE 191          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 3.617e-54
Identity = 107/181 (59.12%), Postives = 136/181 (75.14%), Query Frame = 2
Query:   14 QNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG  +KAII+FVPVP L  F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SRT   QKRPRSRTLTAVHD+IL DLVYP EIVGKR R K D S+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   14 EKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRK--SRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFPE 191          
BLAST of FC931837 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.724e-54
Identity = 105/184 (57.07%), Postives = 139/184 (75.54%), Query Frame = 2
Query:    5 PSRQNPSELETAIAGALFDLESNTQDLKASLRPLQFVSAREVEVGHGKKAIIVFVPVPLLNNFHKIQQRLTRELEKKFSDRHVLFVAQRRILPRPKRSVNSRTTQTQKRPRSRTLTAVHDSILSDLVYPVEIVGKRTRTKEDGSKTLKVILDEKERGGVDHRLDAYGEVYRRLTGRSVAFEFPQ 556
            P+ + P E E+ I+ AL +LE N+ DLKA LR L   +A+E+EVG  +KAII+FVPVP L +F KIQ RL RELEKKFS +HV+F+AQRRILP+P R   SR+   QKRPRSRTLT+VHD+IL DLV+P EIVGKR R K D S+ +KV LD+ ++  V+H+++ +  VY++LTG+ V FEFP+
Sbjct:   11 PNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTR--KSRSKNKQKRPRSRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFPE 191          
The following BLAST results are available for this feature:
BLAST of FC931837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_NEUCR1.966e-8481.5840S ribosomal protein S7 OS=Neurospora crassa GN=r... [more]
RS7_SCHPO1.419e-5859.3640S ribosomal protein S7 OS=Schizosaccharomyces po... [more]
RS7_XENLA2.959e-5659.2440S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_RAT6.591e-5659.2440S ribosomal protein S7 OS=Rattus norvegicus GN=R... [more]
RS7_MOUSE6.591e-5659.2440S ribosomal protein S7 OS=Mus musculus GN=Rps7 P... [more]
RS7_HUMAN6.591e-5659.2440S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
RS7_FELCA6.591e-5659.2440S ribosomal protein S7 OS=Felis catus GN=RPS7 PE... [more]
RS7_BOVIN6.591e-5659.2440S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=... [more]
RS7_ICTPU3.617e-5459.1240S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]
RS7_TAKRU4.724e-5457.0740S ribosomal protein S7 OS=Takifugu rubripes GN=r... [more]

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Properties
Property NameValue
Genbank descriptionC34201G02EF PostHarveN Citrus clementina cDNA clone C34201G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931837 ID=FC931837; Name=FC931837; organism=Citrus clementina; type=EST; length=608bp
CTCGCCGTCCCGGCAGAACCCCTCCGAGCTGGAGACCGCGATCGCCGGCG
CTCTCTTCGACCTTGAGAGCAACACACAGGACCTGAAGGCCAGCCTTCGT
CCCCTGCAGTTCGTCTCTGCCCGCGAGGTTGAGGTCGGCCACGGCAAGAA
GGCCATCATTGTCTTCGTCCCCGTCCCCCTCCTGAACAACTTCCACAAGA
TCCAGCAGCGTCTTACCCGTGAGCTCGAGAAGAAGTTCTCCGACCGCCAC
GTTCTCTTCGTGGCCCAGCGCCGCATCCTGCCCCGCCCCAAGCGCTCCGT
CAACTCGCGCACCACCCAGACTCAGAAGCGCCCCCGCTCGCGCACTCTGA
CCGCTGTCCACGACTCCATCCTCTCCGACCTCGTCTACCCCGTCGAGATT
GTCGGCAAGCGCACCCGCACCAAGGAGGACGGCTCCAAGACCCTCAAGGT
CATCCTCGACGAGAAGGAGCGTGGTGGGGTCGACCACCGCCTCGATGCCT
ACGGCGAGGTCTACCGCCGTCTCACCGGCCGCTCCGTTGCCTTCGAGTTC
CCCCAGAGCGGCGCTGAGTTCTAAATGCATGTTTAGAATTCTCGNTCACT
TTGACTTT
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