FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12795 contig Ccv1_Contig12795:240..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 68/231 (29.44%), Postives = 110/231 (47.62%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G + +   F++    E      + L+     ++A++      +             V   + G ++I + E  RRGI V N   + +D  AD A  LL+   R++  AD F R G W + G      + LG  + GK +GIVG G IG  VA+R + FG  +LY SR +KP       A + ++ +L   SD +++   LT +T+ MIN E +  + K  I+ N+ RG V+
Sbjct:   15 GIEMLKEHFEVEVWPEEREIPREVLLKKVRDVDALVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRILYYSRSRKPEAEKELGAEFRSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 63/205 (30.73%), Postives = 103/205 (50.24%), Query Frame = 1
Query:  109 LISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD--YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKK-----PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            L+ +    +A+LC     +             + T S G +HI +PE  +RGI V +   + +D  A+  VGL++ V R+I  AD+ +R G W K  +  +  G +L GK +G+VGLG IG+  AKRL +F   +LY    ++      +P   ++++  L   SD + I   LT +T  +IN E +  + K   + N  RG V+
Sbjct:   41 LLRNIRDKDALLCLLTDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYDIERRWDVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_THELI (Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 70/231 (30.30%), Postives = 109/231 (47.19%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLW--SKIGDYP---LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K I + +++    +        L+     ++A++      V             +   + G ++I + E  +RGI V N   + +D  AD A  LL+ V R+I  AD F+R G W  S++G +P   LG  L GK +GIVG G IG  +AKR + FG  ++Y SR +KP       A Y +   L   SD + +   LT +T  MI  + +  +    I+ N  RGAV+
Sbjct:   15 GIKMIEKFYEIELWKDPKAPPRGVLLEKVREVDALVTLVTDKVDKELLENAPKLKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKPEAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_PYRHO (Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 65/231 (28.14%), Postives = 107/231 (46.32%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++    +      + L+     ++A++      +             V   + G ++I + E  +RGI V N   + +D  AD A  LL+   R +   DRF+R G W K G      + LG  + GK +GI+GLG IG  +AKR + F   +LY SR +K        A +  + +L   SD +++   LT +T  +IN E +  + K  I+ N+ RG V+
Sbjct:   15 GIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 65/231 (28.14%), Postives = 106/231 (45.89%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G + + + F++    +      + L+     ++A++      +             V   + G ++I + E  +RGI V N   + +D  AD A  LL+   R +   D+F R G W K G      + LG  + GK +GI+G G IG  +AKR + F   +LY SR +KP       A +  + EL   SD +++   L  +T  MIN E +  + +  I+ NV RG VI
Sbjct:   16 GIEMLEKEFEVEVWEDEREIPREILLEKVKDVDALVTMLSERIDREVFERAPRLRIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAKRARGFDMRILYYSRTRKPEVEKELNAEFKPLDELLRESDFVVLAVPLNKETYHMINEERLKMMKRTAILINVARGKVI 246          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 64/231 (27.71%), Postives = 110/231 (47.62%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD--YPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++    +      + L+     ++A++      +             V   + G ++I + E  + G+ + N   + ++  AD A  LL+   R++  AD+F+R G W K G   +PL   G  + G+ +GIVG G IG  +A+R + FG  +LYNSR +KP       A +  + EL   SD +++   LT +T  MIN E +  +    I+ N+ RG V+
Sbjct:   15 GIKMLREHFEVEVWEDEHEISREVLLEKVRDVDALVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVEKELGAEFMPLDELLKESDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.506e-20
Identity = 60/175 (34.29%), Postives = 90/175 (51.43%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG-----DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            V   + G ++I + E  RRGI V N   + ++  AD A  LL+   R +   D+F+R G W + G      + LG +L GK +GIVG G IG  +A+R + F   +LY SR +K        A Y  + E+   SD +I+   LT +T  MIN E +  +    I+ N+ RG V+
Sbjct:   71 VANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 59/175 (33.71%), Postives = 90/175 (51.43%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD--YPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            V   + G +++ + E  RRGI V N   + ++  AD A  LL+   R++  AD F R G W + G   +PL   G  + GK +GI+G G IG  VA+R + FG  +LY SR +KP       A +  + EL   SD +++   LT +T  MI    +  +    I+ N+ RG V+
Sbjct:   71 VANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEEELKAEFKPLEELLKESDFVVLAVPLTKETYHMIGERELKLMKPTAILVNIARGKVV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GRHPR_MOUSE (Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 56/172 (32.56%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGD-YPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRGKKPVPYAFYS----NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + T S GV+H+ + E ++RGI V     + +D  A+ AV LL+   R++  A   ++ G WS     +  G  L    VGIVGLG IG  +A+RL+ FG    LY  R  +P   A +      + +LAA SD +++ C+LT  T  + +++    +    I  N+ RG V+
Sbjct:   78 ISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVKNGGWSSWSPLWMCGYGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVV 249          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 59/175 (33.71%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKI--GDYP---LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKK----PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            V   + G ++I +    R GI V N   + ++  A+    L++   R++  AD F+R G W ++  G +P   LG +L GK +GI+G+G IG +VA+  +AFG  ++Y+SR +K        A Y ++ +L   SD L I   LTD+TR +I    +  + K  I+ N GRGA++
Sbjct:   72 VAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIV 246          
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
GYAR_PYRKO1.267e-2229.44Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
GYAR_THEPD2.822e-2230.73Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_THELI1.072e-2130.30Glyoxylate reductase OS=Thermococcus litoralis GN=... [more]
GYAR_PYRHO2.389e-2128.14Glyoxylate reductase OS=Pyrococcus horikoshii GN=g... [more]
GYAR_PYRAB3.120e-2128.14Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
GYAR_THEON5.322e-2127.71Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
GYAR_PYRFU4.506e-2034.29Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
GYAR_THEGJ2.236e-1933.71Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
GRHPR_MOUSE6.506e-1932.56Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
GYAR_AERPE8.497e-1933.71Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]

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Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
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