FC931846

Overview
NameFC931846
Unique NameFC931846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15401 contig Ccv1_Contig15401:1..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931846 vs. ExPASy Swiss-Prot
Match: OSB1_ARATH (Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.324e-20
Identity = 71/184 (38.59%), Postives = 103/184 (55.98%), Query Frame = 2 
Query:  128 SSDHPRFSSVYSDAKRGGSAVYRHALKFQRPTTIKWQAQLENSVNFIGTVVRPLERSNV----FGVYTLLHVKNS-HSDRGFDILLAVGGDMAQLCQKHLKPNDFIYVTGQLHSYSK--VDKNGKLCLRYKVVVEDLNYV-RECGQGLAFKKSVESKSRGGEAGMEKYENRFYLWHLYFANPYE 655
            SS  P+ S  +SD   G SAVY HA  F++P + K +  L NSV+ +G V R ++  N     FGV+T+L VK+  + +R F I L +   MA+ C  HLK ND I V+G+L SYSK   D    L L Y+V V ++NYV       L  + S   K++  +   E  ++  YLW ++F+NPY+
Sbjct:   19 SSSFPK-SRFFSD---GESAVYHHARLFKKPLSTKLKFNLVNSVSLMGFVDRSIQVMNTGPDRFGVFTILRVKDPLNPNRSFRISLRMWDAMARTCIAHLKLNDHILVSGRLESYSKSSSDVYSGLNLDYQVKVAEVNYVAAPPSHVLDSQISKNPKTKTEDDIEESKKDEIYLWQVFFSNPYD 198
The following BLAST results are available for this feature:
BLAST of FC931846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OSB1_ARATH2.324e-2038.59Protein OSB1, mitochondrial OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC34201G11EF PostHarveN Citrus clementina cDNA clone C34201G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931846 ID=FC931846; Name=FC931846; organism=Citrus clementina; type=EST; length=656bp
GGGAATAAAAATTTGGTTGCGCCAGTCGCATTCAAATTCGGAATTTATGA
TCGCGCGTCGTATCGGGCAGTCTCTCAGAACCGTGTGCCGATTTTCGCTC
CGAAGAGTTGCCCCATTCTGTTTGTCTTCGTCTGACCACCCTAGGTTTTC
GAGCGTTTACTCGGATGCTAAGCGAGGTGGGAGCGCGGTTTACAGACACG
CGCTCAAGTTTCAGCGTCCAACGACGATAAAGTGGCAAGCTCAGTTAGAG
AACTCTGTTAACTTTATCGGAACAGTGGTTCGCCCCCTTGAAAGAAGCAA
TGTATTTGGCGTTTACACACTCCTTCACGTCAAAAACTCCCATTCCGATC
GCGGATTTGATATACTGCTGGCAGTGGGAGGCGACATGGCACAATTGTGT
CAAAAACATCTGAAGCCGAATGATTTCATTTATGTTACAGGTCAACTACA
CTCTTACTCAAAGGTGGATAAGAATGGAAAGCTCTGCCTGCGTTACAAGG
TGGTTGTGGAAGATTTGAATTATGTTAGAGAATGTGGTCAAGGACTCGCC
TTCAAGAAATCTGTGGAATCAAAATCAAGAGGAGGAGAAGCTGGCATGGA
AAAGTATGAAAACCGATTTTACTTGTGGCATTTGTACTTTGCCAACCCCT
ATGAAT
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