FC931918

Overview
NameFC931918
Unique NameFC931918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7996 contig Ccv1_Contig7996:1404..2101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAP_DICDI (Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 85/242 (35.12%), Postives = 114/242 (47.11%), Query Frame = 3
Query:   15 NPK-DKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVNATTLHAWLFAF---FTSIKRKQGVP------------------VGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDN 665
            NPK DK HLMPIITPAYP MNS+YNVS STL++M  EF RG EI   +E  E    W  L E   FF  Y  Y+ ID  + N +D R W+GW+ES+LR L   + +T    +   +   FT+   K   P                   G  +  D+   V EF   +  +   +P    M I V ++ ++ LP FV   G  P  P K T        +K SS  +P A   + + +  DN
Sbjct:  336 NPKRDKAHLMPIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRYSFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAVPYPKGFTNNLHKANNPDQICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEG--PEEPVKTT--------KKRSSTGEPSATRKKLKSENSDN 565          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOG_HUMAN (Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 68/220 (30.91%), Postives = 111/220 (50.45%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVN----ATTLHA----------------WLFAFFTSIKRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRA 590
            DPR NP D+YHLMPIITPAYP  NS+YNVSTST  +M++EF++G  + + + + ++  DW  L EP  FF+ Y++Y+ +  SA   ++   W G VES++R L   +      T  H                 ++  +F  I  ++ V   E    D+   ++ F   V    +   + K GM+I   HV ++ L +++ P  +   +  +   D  R+
Sbjct:  300 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL-PAEILQKKKKQSLSDVNRS 515          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOG_MOUSE (Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23
Identity = 65/200 (32.50%), Postives = 104/200 (52.00%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVN----ATTLHA----------------WLFAFFTSIKRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFV 530
            DPR NP D+YHLMPIITPAYP  NS+YNVSTST  +M++EF++G  + + + + ++  DW  L EP  FF+ Y++Y+ +  SA   ++   W G VES++R L   +      T  H                 ++  +F  I  ++ V   E    D+   ++ F   V    +   + K GM+I   HV ++ L +++
Sbjct:  300 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKANNYVSMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL 496          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOB_MOUSE (Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I   +  N+A  +W  LFE  +FF+ YK+Y+ +  SA        W G VES++R L
Sbjct:  301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKA--EWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRIL 401          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOA_MOUSE (Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +  SA        W G VES++R L
Sbjct:  301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRIL 401          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOA_HUMAN (Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +  SA        W G VES++R L
Sbjct:  301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRIL 401          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOA_BOVIN (Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I + +  ++A  +W  LFE   FF+ YK+Y+ +  SA        W G VES++R L
Sbjct:  301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRIL 401          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOB_HUMAN (Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I   +  ++A  +W  LFE  +FF+ YK+Y+ +  SA        W G VES++R L
Sbjct:  301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKA--EWSKLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRIL 401          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPO1_XENLA (Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I + +   +A  +W  LF+   FF+ YK+Y+ +  SA        W G VES++R L
Sbjct:  283 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKA--EWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGLVESKIRIL 383          
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPO2_XENLA (Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 3
Query:    3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311
            DPR NP D+YHLMPIITPAYP  NS+YNVS ST  +M++EF++G  I + +   +A  +W  LF+   FF+ YK+Y+ +  SA        W G VES++R L
Sbjct:   51 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKA--EWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGLVESKIRIL 151          
The following BLAST results are available for this feature:
BLAST of FC931918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PAP_DICDI3.742e-2735.12Poly(A) polymerase OS=Dictyostelium discoideum GN=... [more]
PAPOG_HUMAN5.592e-2330.91Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG... [more]
PAPOG_MOUSE7.304e-2332.50Poly(A) polymerase gamma OS=Mus musculus GN=Papolg... [more]
PAPOB_MOUSE6.836e-2149.51Poly(A) polymerase beta OS=Mus musculus GN=Papolb ... [more]
PAPOA_MOUSE1.523e-2048.54Poly(A) polymerase alpha OS=Mus musculus GN=Papola... [more]
PAPOA_HUMAN1.523e-2048.54Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA... [more]
PAPOA_BOVIN1.523e-2048.54Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA P... [more]
PAPOB_HUMAN2.598e-2048.54Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB ... [more]
PAPO1_XENLA3.393e-2047.57Poly(A) polymerase alpha-A (Fragment) OS=Xenopus l... [more]
PAPO2_XENLA7.558e-2047.57Poly(A) polymerase alpha-B OS=Xenopus laevis GN=pa... [more]

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Properties
Property NameValue
Genbank descriptionC34202F01EF PostHarveN Citrus clementina cDNA clone C34202F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931918 ID=FC931918; Name=FC931918; organism=Citrus clementina; type=EST; length=698bp
GGGATCCGAGAAGAAATCCGAAGGACAAGTATCATTTGATGCCTATAATA
ACTCCAGCTTATCCTTGCATGAATTCCAGCTATAATGTGTCAACAAGTAC
CTTGCGGATTATGATGGATGAATTTCAGCGAGGACATGAAATTTGTGAGG
CTATGGAAAAAAATGAAGCTGATGTTGATTGGGATACACTTTTTGAGCCT
TTCACCTTTTTTGAAGCATATAAAAATTATCTACGGATAGATATCTCTGC
AGAAAATGCTGATGATTTAAGAAATTGGAAAGGTTGGGTTGAGTCTCGGC
TCCGTCAGCTTACATTGAAGGTTAATGCCACAACTCTTCATGCATGGCTG
TTTGCATTTTTCACTTCTATAAAGCGGAAACAAGGAGTTCCTGTTGGTGA
AGGTGAACAGTTTGATATTAGGTTAACTGTGAAGGAGTTTAAGCAAGCTG
TCAGCATGTACACGTTACGGAAGCCTGGAATGCAGATTAGTGTTGCTCAT
GTTACACGTAGGAACTTACCTAACTTTGTATTTCCGGGTGGGGTTCGACC
TTCTCGTCCTTCAAAAGGAACTTGGGATAGTAGGCGGGCTTTGGAACGTA
AGGTGTCAAGCCATACTAAACCAGGAGCAGATGATGGAAGGAAGAGAAAA
CAGACGGATGATAATGTAGATACTCACTTGAGAAATGCCAAGTGCCAT
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