FC931918
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAP_DICDI (Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27 Identity = 85/242 (35.12%), Postives = 114/242 (47.11%), Query Frame = 3 Query: 15 NPK-DKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVNATTLHAWLFAF---FTSIKRKQGVP------------------VGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDN 665 NPK DK HLMPIITPAYP MNS+YNVS STL++M EF RG EI +E E W L E FF Y Y+ ID + N +D R W+GW+ES+LR L + +T + + FT+ K P G + D+ V EF + + +P M I V ++ ++ LP FV G P P K T +K SS +P A + + + DN Sbjct: 336 NPKRDKAHLMPIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRYSFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLESTPKMKFAVPYPKGFTNNLHKANNPDQICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIKKKQLPAFVKDEG--PEEPVKTT--------KKRSSTGEPSATRKKLKSENSDN 565
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOG_HUMAN (Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23 Identity = 68/220 (30.91%), Postives = 111/220 (50.45%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVN----ATTLHA----------------WLFAFFTSIKRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPSKGTWDSRRA 590 DPR NP D+YHLMPIITPAYP NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y+ + SA ++ W G VES++R L + T H ++ +F I ++ V E D+ ++ F V + + K GM+I HV ++ L +++ P + + + D R+ Sbjct: 300 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL-PAEILQKKKKQSLSDVNRS 515
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOG_MOUSE (Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.304e-23 Identity = 65/200 (32.50%), Postives = 104/200 (52.00%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKVN----ATTLHA----------------WLFAFFTSIKRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFV 530 DPR NP D+YHLMPIITPAYP NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y+ + SA ++ W G VES++R L + T H ++ +F I ++ V E D+ ++ F V + + K GM+I HV ++ L +++ Sbjct: 300 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKANNYVSMWFLGIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL 496
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOB_MOUSE (Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21 Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311 DPR NP D+YHLMPIITPAYP NS+YNVS ST +M++EF++G I + N+A +W LFE +FF+ YK+Y+ + SA W G VES++R L Sbjct: 301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKA--EWSKLFEAPSFFQKYKHYIVLLASAPTEKQHLEWVGLVESKIRIL 401
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOA_MOUSE (Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311 DPR NP D+YHLMPIITPAYP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ + SA W G VES++R L Sbjct: 301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRIL 401
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOA_HUMAN (Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311 DPR NP D+YHLMPIITPAYP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ + SA W G VES++R L Sbjct: 301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRIL 401
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOA_BOVIN (Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3) HSP 1 Score: 99.7525 bits (247), Expect = 1.523e-20 Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311 DPR NP D+YHLMPIITPAYP NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ + SA W G VES++R L Sbjct: 301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRIL 401
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPOB_HUMAN (Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20 Identity = 50/103 (48.54%), Postives = 68/103 (66.02%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311 DPR NP D+YHLMPIITPAYP NS+YNVS ST +M++EF++G I + ++A +W LFE +FF+ YK+Y+ + SA W G VES++R L Sbjct: 301 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKA--EWSKLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRIL 401
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPO1_XENLA (Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-A PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20 Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311 DPR NP D+YHLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF+ YK+Y+ + SA W G VES++R L Sbjct: 283 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKA--EWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGLVESKIRIL 383
BLAST of FC931918 vs. ExPASy Swiss-Prot
Match: PAPO2_XENLA (Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-B PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20 Identity = 49/103 (47.57%), Postives = 67/103 (65.05%), Query Frame = 3 Query: 3 DPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDISAENADDLRNWKGWVESRLRQL 311 DPR NP D+YHLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF+ YK+Y+ + SA W G VES++R L Sbjct: 51 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKA--EWSKLFDAPNFFQKYKHYILLLASAPTEKQRLEWVGLVESKIRIL 151 The following BLAST results are available for this feature:
BLAST of FC931918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931918 ID=FC931918; Name=FC931918; organism=Citrus clementina; type=EST; length=698bpback to top |