FC931920

Overview
NameFC931920
Unique NameFC931920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931920 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.474e-58
Identity = 108/139 (77.70%), Postives = 121/139 (87.05%), Query Frame = 1
Query:  205 MDIQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 621
            M++QS+FDRLLFFEHARK+AE  YA++PLDADNLTRWGGALLELSQFQ V +SK+MI DA SKLEEAL V+P +HD LWCLGNAHTSH FLTPD DEAK YF KAT  FQQA D +PSN+LY+KSLEV AKAPELHMEI
Sbjct:    1 MEMQSEFDRLLFFEHARKSAETTYAQNPLDADNLTRWGGALLELSQFQPVAESKQMISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEI 139          
BLAST of FC931920 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.705e-46
Identity = 82/134 (61.19%), Postives = 110/134 (82.09%), Query Frame = 1
Query:  217 SDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 618
            +DF+RL+ FEHARK +EA Y  DPLD++NL +WGGALLELSQFQ +P++K M+ DAISKLEEAL ++P +H  LWC+ NA+T+HAF   D +EAKE+F+KAT YFQ+A +E+P N+ Y+KSL+ + KAPELHM+
Sbjct:    6 ADFERLIMFEHARKNSEAQYKNDPLDSENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQ 139          
BLAST of FC931920 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.350e-45
Identity = 83/138 (60.14%), Postives = 108/138 (78.26%), Query Frame = 1
Query:  205 MDIQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 618
            MD +++FDR+L FE  R+ AE  Y  +PLDADNLTRWGG LLELSQF ++ D+K+MI +AI+K EEAL++ P + + +WC+GNA+TS AFLTPD+ EAK  F+ AT +FQQAVDE+P N  Y KSLE+ AKAP+LH E
Sbjct:    1 MDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138          
BLAST of FC931920 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.529e-44
Identity = 86/136 (63.24%), Postives = 109/136 (80.15%), Query Frame = 1
Query:  205 MDIQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 612
            MD+Q++ +RL+ FEHARK AEA Y K+PLDA+NLTRW GALLELSQFQT P  K+MIL+AI KL EAL++ P +HD LW +GNAH S  FL+ DQ EA + F KA+ +FQ AV+E+P +ELY+KSL +A+KAPELH
Sbjct:    1 MDMQNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELSQFQTEP--KQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELH 134          
BLAST of FC931920 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.687e-41
Identity = 82/139 (58.99%), Postives = 104/139 (74.82%), Query Frame = 1
Query:  205 MDIQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 621
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEI
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEI 141          
BLAST of FC931920 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.687e-41
Identity = 82/139 (58.99%), Postives = 104/139 (74.82%), Query Frame = 1
Query:  205 MDIQSDFDRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 621
            M   SD +R+ FF+ A + A+  Y ++P DADNLTRWGGALLELSQ +  P+S K + DA SKLEEAL + P + D LWCLGNA TSH F T D  +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEI
Sbjct:    3 MGAMSDPERMFFFDLACQNAKVTYEQNPHDADNLTRWGGALLELSQMRNGPESLKCLEDAESKLEEALKIDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEI 141          
BLAST of FC931920 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 78/129 (60.47%), Postives = 97/129 (75.19%), Query Frame = 1
Query:  226 DRLLFFEHARKTAEAAYAKDPLDADNLTRWGGALLELSQFQTVPDSKKMILDAISKLEEALMVSPNRHDTLWCLGNAHTSHAFLTPDQDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH 612
            D+L FFE  RK AE  Y  +P DADNL RWG ALLELSQFQ V DS KMI DAISKLE+A+++ P +HD +WCLGNA+TS+A LTPD  +A+  F  A L+F  AV ++P N++Y KSLE+A KAP+LH
Sbjct:    2 DKLNFFEEIRKDAEETYKLNPEDADNLMRWGEALLELSQFQNVIDSLKMIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLH 130          
The following BLAST results are available for this feature:
BLAST of FC931920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU2.474e-5877.70Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TO202_ARATH3.705e-4661.19Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TO203_ARATH5.350e-4560.14Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TO204_ARATH4.529e-4463.24Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TOM20_ORYSJ4.687e-4158.99Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSI4.687e-4158.99Probable mitochondrial import receptor subunit TOM... [more]
TO201_ARATH2.177e-3860.47Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34202F03EF PostHarveN Citrus clementina cDNA clone C34202F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931920 ID=FC931920; Name=FC931920; organism=Citrus clementina; type=EST; length=711bp
GATGGATCCGAAATTTGAGTCAATTTGACCATTAAACCCAAAGTCCCAAA
CCGCCCCAAGCTTCGCCTTCACTAAAGTCGCACCACTTTTGCACCGAGTT
AGGGTTTCAGCGAACTTTCAACACACACGCAGAGAGACTCTAGTCTCGTT
CATCTGTCAGTACAAAGCAATAAAGAGAGGGCGCGAGAGAGAGAGAGACA
CGCCATGGACATACAAAGCGACTTCGATAGATTGCTCTTCTTTGAACACG
CTCGCAAAACCGCCGAAGCTGCCTACGCCAAGGACCCTCTCGATGCCGAT
AATTTAACGAGATGGGGCGGTGCTCTTCTGGAGTTGTCCCAGTTTCAAAC
TGTTCCAGATTCAAAGAAGATGATATTAGATGCAATTTCAAAGCTGGAGG
AGGCATTGATGGTTAGCCCCAACAGACACGACACATTGTGGTGTTTGGGA
AATGCTCATACTTCTCATGCTTTTTTGACTCCTGACCAGGATGAGGCCAA
GGAGTATTTCAATAAGGCAACTCTGTACTTTCAGCAAGCAGTTGATGAGG
AACCCTCGAATGAGCTTTATCAGAAGTCTTTAGAGGTGGCTGCAAAGGCT
CCGGAGTTGCACATGGAAATCCACAAGCATGGTTTAGGTCAACAACAATG
GGGCCATCTACTGGACCTTCTTCTACTTCTTCGGGNTGCAAGACTTCAAG
AAGAAGAAAGC
back to top