FC931923

Overview
NameFC931923
Unique NameFC931923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931923 vs. ExPASy Swiss-Prot
Match: LETM1_CHICK (LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Gallus gallus GN=LETM1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.145e-13
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    3 VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKL 299
            V+SL+  EL+ ACR RG+  L ++ E +R+QL+ WLDL LN  +P+SLLILSRA  +   + P + ++ TL +LP+ V     V     E    + + +L
Sbjct:  364 VDSLTVKELQAACRARGMRALGVTEERLREQLKQWLDLHLNQEIPTSLLILSRAMYLPDTLSPADQLKTTLQTLPESVAKEAQVKVAEVEGEKVDNKARL 463          
BLAST of FC931923 vs. ExPASy Swiss-Prot
Match: LETM1_RAT (LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.575e-12
Identity = 39/100 (39.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:    3 VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKL 299
            V+SL+  EL+ ACR RG+  L ++ + ++ QL+ WLDL L H +P+SLLILSRA  +   + P + +++TL +LP+ V     V A   E    + + KL
Sbjct:  366 VDSLTVKELQAACRARGMRALGVTEDRLKGQLKQWLDLHLYHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVKAAEVEGEQVDNKAKL 465          
BLAST of FC931923 vs. ExPASy Swiss-Prot
Match: LETM1_MOUSE (LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Mus musculus GN=Letm1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.057e-12
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:    3 VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKL 299
            V+SL+  EL+ ACR RG+  L ++ + ++ QL+ WLDL L+H +P+SLLILSRA  +   + P + +++TL +LP+ V     V     E    + + KL
Sbjct:  366 VDSLTVKELQAACRARGMRALGVTEDRLKGQLKQWLDLHLHHEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVKVAEVEGEKVDNKAKL 465          
BLAST of FC931923 vs. ExPASy Swiss-Prot
Match: LETM1_HUMAN (LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 7.817e-12
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    3 VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKL 299
            V+SL+  EL+ ACR RG+  L ++ + +R QL+ WLDL L+  +P+SLLILSRA  +   + P + +++TL +LP+ V     V     E    + + KL
Sbjct:  367 VDSLNVKELQAACRARGMRALGVTEDRLRGQLKQWLDLHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVKVAEVEGEQVDNKAKL 466          
BLAST of FC931923 vs. ExPASy Swiss-Prot
Match: LETM1_DANRE (LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Danio rerio GN=letm1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.021e-11
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:    3 VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKL 299
            V+SL+  EL+ ACR RG+  L ++ E +R+QL+ WL+L LN  +P+SLL+LSRA  +   + P + ++ TL +LP+ +     V     + S  + + KL
Sbjct:  374 VDSLTANELQAACRVRGMRALGVTEERLREQLKQWLELHLNQHIPTSLLLLSRAMFLPDTLSPADQLKTTLQNLPEIMAKEAQVKVAELDFSKVDNKTKL 473          
BLAST of FC931923 vs. ExPASy Swiss-Prot
Match: LETM1_BOVIN (LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Bos taurus GN=LETM1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.970e-11
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    3 VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKL 299
            V+SL+  EL+ ACR RG+  L ++ + +R QL+ WL+L L+  +P+SLLILSRA  +   + P + +++TL +LP+ V     V     E    + + KL
Sbjct:  353 VDSLNVKELQAACRARGMRALGVTEDRLRGQLKQWLELHLHQEIPTSLLILSRAMYLPETLSPADQLKSTLQTLPEIVAKEAQVKVAEVEGEQVDNKAKL 452          
BLAST of FC931923 vs. ExPASy Swiss-Prot
Match: LETM1_XENTR (LETM1 and EF-hand domain-containing protein 1, mitochondrial OS=Xenopus tropicalis GN=letm1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.067e-11
Identity = 34/100 (34.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:    3 VESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKL 299
            ++SL+  EL+ ACR RG+  L ++ + +++QL+ WL+L L+  +P+SLL+LSRA  +   + P + ++ TL +LP+ V     V     E    + + KL
Sbjct:  369 LDSLTVTELQAACRARGMRALGVTEDRLKEQLKQWLELHLDQEIPTSLLLLSRALYLPDTLSPADQLKTTLQTLPESVAKEAQVKVAAVECEKVDNKTKL 468          
The following BLAST results are available for this feature:
BLAST of FC931923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LETM1_CHICK4.145e-1339.00LETM1 and EF-hand domain-containing protein 1, mit... [more]
LETM1_RAT1.575e-1239.00LETM1 and EF-hand domain-containing protein 1, mit... [more]
LETM1_MOUSE2.057e-1238.00LETM1 and EF-hand domain-containing protein 1, mit... [more]
LETM1_HUMAN7.817e-1238.00LETM1 and EF-hand domain-containing protein 1, mit... [more]
LETM1_DANRE1.021e-1137.00LETM1 and EF-hand domain-containing protein 1, mit... [more]
LETM1_BOVIN2.970e-1137.00LETM1 and EF-hand domain-containing protein 1, mit... [more]
LETM1_XENTR5.067e-1134.00LETM1 and EF-hand domain-containing protein 1, mit... [more]
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Properties
Property NameValue
Genbank descriptionC34202F06EF PostHarveN Citrus clementina cDNA clone C34202F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931923 ID=FC931923; Name=FC931923; organism=Citrus clementina; type=EST; length=443bp
GAGTGGAGTCTCTTTCGGAAGCAGAGCTTCGTCAAGCCTGTAGAGATCGA
GGCTTATTAGGATTACTTTCGGTAGAGGAAATGCGGCAACAGTTGCGTGA
TTGGCTGGATTTGTCTCTCAATCACTCTGTACCATCTTCTCTTTTGATTC
TTTCTAGAGCCTTCTCTGTGTCTGGAAAAGTTAGGCCTGAGGAAGCTGTT
CAAGCTACACTCTCCTCCCTTCCAGATGAGGTTGTGGATACGGTTGGGGT
TACAGCTTTGCCATCTGAAGATTCTGTTTCAGAAAGGAGAAGGAAGTTGG
AGTTCCTAGAAATGCAGGAAGAACTGATAAAGGAGGAGGAAGAGGAAGAG
GAAGAAGAGCAAGCCAAGATGAAGGAAGCTGTTAGCAGCCGAAAGGATGT
TGCGTTGGAAGAAATGACGGATCCAACTGCNTAAGAAAGCACA
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