FC931932

Overview
NameFC931932
Unique NameFC931932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.097e-38
Identity = 79/192 (41.15%), Postives = 122/192 (63.54%), Query Frame = 1
Query:  118 KTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            K  IG+IG+GVMG +MAS +L+ G+ V VY RT  KA  +  +GA    +  D++K + V+ +MVG P DV  +    +GI+     GA  +D T+S P+LA++I + A+EK  +A+DAPVSGGDIGA++G LAI   G+    +   P+F ++G+   + G AG GQ  K+ NQI + A ++G++E + +A
Sbjct:    2 KKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEADVIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKIAEAAKEKALFALDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYA 193          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 74/191 (38.74%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  124 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQ-LQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGK-PTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ++ +IG+GVMG  MA  L+  G+ VTVY RT +KA Q ++  G   A +P D A+   +VF+ VG   D+R + L   GIV G++ GA+ VD T++   +AREI       +   +DAPVSGG  GA +G L +   GD A    + P+     +    +G  G GQ  K+ NQI +   + GL+EGL FA
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVLGEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFA 193          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 69/197 (35.03%), Postives = 109/197 (55.33%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM--GEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ITP+  RIG++G+G+MG+ + S LL  G+ VTV+ RT+ K      +GA L  +P +V     + FS V  P+  R + L P G++ G+ PG  YV+ ++  P    E+ +V   +    ++APVSG    + DG L I AAGD +V +  +  F+ +GK +F   GEAG      +   +V G+ +  ++EGL  A
Sbjct:  171 ITPTDKRIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLA 367          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 67/190 (35.26%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  124 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ++G+IG+G+MG  M+  LL AGYS+ V  R       + + GA  A++   +A+   V+ +M+     V+ +AL  +GI+ G  PG V +D +S  P  +REI +  + K    +DAPVSGG+  A DG L++   GD A+      L + + G     GE G G   K+ANQ++V  N+  +SE L  A
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLA 191          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 67/190 (35.26%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  124 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVL-GKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ++G+IG+G+MG  M+  LL AGYS+ V  R       + + GA  A++   +A+   V+ +M+     V+ +AL  +GI+ G  PG V +D +S  P  +REI +  + K    +DAPVSGG+  A DG L++   GD A+      L + + G     GE G G   K+ANQ++V  N+  +SE L  A
Sbjct:    2 KVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLA 191          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 73/190 (38.42%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  124 RIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ++G+IG+G+MG  MA  L  AG+ + V       A +L S GA    +   V ++S ++F MV     V  +    +G       G   VD +S  P   +   +   E     +DAPVSGG+IGAR+G L+I   GD AV + + PLFE+LGK  T +G  G GQ+CK+ANQI+V  N+  +SE L+FA
Sbjct:    2 KLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFA 190          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A
Sbjct:  262 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLA 457          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLA 458          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27
Identity = 64/196 (32.65%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLA 458          
BLAST of FC931932 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 63/196 (32.14%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  106 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFA 690
            +TP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A
Sbjct:  263 VTPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLA 458          
The following BLAST results are available for this feature:
BLAST of FC931932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
YKWC_BACSU2.097e-3841.15Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
Y1503_SHEFN1.610e-3038.74Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
GLYR1_DANRE1.507e-2835.03Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GARR_ECOLI1.507e-2835.262-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL61.507e-2835.262-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLXR_ECOLI9.766e-2838.422-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLYR1_RAT4.847e-2732.65Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_HUMAN4.847e-2732.65Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_CHICK4.847e-2732.65Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_BOVIN6.330e-2732.14Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]

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Properties
Property NameValue
Genbank descriptionC34202G03EF PostHarveN Citrus clementina cDNA clone C34202G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931932 ID=FC931932; Name=FC931932; organism=Citrus clementina; type=EST; length=694bp
GATGGTGCACGGCCTCACAAGCTCACTTCATTTTTCACTCCCCAAAGTCC
ATCTTCTCTCTCACTCATCAACTCTGCAAATATGGAAACTCCTTATCCAA
AGCCCATTACTCCCAGCAAGACCCGCATCGGCTGGATCGGGATCGGCGTA
ATGGGCAACGCCATGGCTTCCCGCCTTCTCTCCGCCGGCTACTCCGTCAC
CGTCTACGCTCGCACCTCATCAAAAGCCCTTCAGCTCCAATCACAAGGCG
CCACTCTCGCCGCTTCACCGTTCGACGTCGCCAAATCAAGCGGCGTTGTC
TTCTCCATGGTGGGCACCCCACAAGACGTTCGATCAATTGCCCTCGATCC
CGACGGCATCGTTTCTGGCCTCAACCCCGGCGCCGTCTACGTTGACACCA
CGAGCAGTCACCCTGCCCTCGCGCGGGAAATATTCAAAGTCGCAAGAGAG
AAAGATTGCTGGGCTGTTGACGCACCCGTATCCGGAGGCGACATTGGCGC
CCGAGATGGGAAATTAGCTATATTTGCTGCTGGTGATAGTGCTGTTGTGC
AGTGGCTGACTCCGTTGTTTGAGGTTCTGGGGAAGCCTACGTTTATGGGC
GAGGCGGGTTGTGGGCAAAGCTGTAAAATTGCGAATCAGATTGTGGTGGG
AGCAAACTTGTTGGGACTGAGTGAAGGNTTGGTGTTTGCTGATA
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