FC931947

Overview
NameFC931947
Unique NameFC931947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length536
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15396 contig Ccv1_Contig15396:6..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931947 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.446e-28
Identity = 69/146 (47.26%), Postives = 77/146 (52.74%), Query Frame = 2 
Query:  125 GYASH----------HGGPPSSQPYSAQYGAPPTAQPYSAQYGAPPTVQPYGARPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMY 532
            GY +H          +GG P    +   YG  P    +   YGAPP    YG+                                  PFASL+PS+FPPGTDPNIVACFQ ADRDNSG IDDKELQGALSSYNQSFS+RTV LLMY
Sbjct:   99 GYGAHPSSGPSDYGGYGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQASYGS----------------------------------PFASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMY 210
[Close]
BLAST of FC931947 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25
Identity = 71/163 (43.56%), Postives = 79/163 (48.47%), Query Frame = 2 
Query:  131 ASHHGGPPSSQPYS---AQYGAPPTAQPYSAQYGAPPTV---------------QP------YGARP-----HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMY 532
            +S +G PP S PY+     Y  PP  +PY   YGAPP                 QP      YGA P                                    +PFASL+PS F PGTDPNIVACFQ AD+D SG IDDKELQGALSSY Q FS+RTV LLMY
Sbjct:   67 SSSYGAPPPSAPYAPSPGDYNKPPKEKPYGGGYGAPPPSGSSDYGSYGAGPRPSQPSGHGGGYGATPPHGVSDYGSYGGAPPRPASSGHGGGYGGYPPQASYGSPFASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMY 229
The following BLAST results are available for this feature:
BLAST of FC931947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CML49_ARATH4.446e-2847.26Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH3.522e-2543.56Probable calcium-binding protein CML50 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34202H06EF PostHarveN Citrus clementina cDNA clone C34202H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931947 ID=FC931947; Name=FC931947; organism=Citrus clementina; type=EST; length=536bp
GAACAAATTCAACCGAAGAAACTTTAGACGCGTCGGCTCTCTCTCGAGAT
TCCACAACATGTCCGGCTATCCCCAACCTCCGCCCGGCTACGGCTACGGC
TCCGCACAGCCTCCGAGTTCTCAGGGCTACGCTTCCCATCACGGCGGGCC
GCCGAGTTCTCAGCCCTACTCTGCTCAGTACGGCGCGCCGCCGACGGCTC
AGCCCTACTCTGCTCAGTACGGCGCACCGCCGACGGTTCAGCCCTACGGG
GCACGGCCACACGCGGCTCCGTCCGCACCCTCTTACGGCGGGCCTTCTCC
GGCTCCTGCTTCTGCTCCAGGCGGCTACCCGCCGGCTCCGGGATCGTACG
GTAATCCGTTTGCATCTCTAATGCCGTCCAGTTTCCCTCCCGGAACGGAT
CCGAACATCGTGGCGTGCTTCCAGTTGGCCGACCGGGACAACAGCGGCCT
CATCGACGATAAGGAGTTGCAAGGAGCCTTGTCTTCTTACAATCAGAGCT
TCAGCTTGAGAACCGTTCGTCTGCTTATGTACACAT
back to top