FC931953

Overview
NameFC931953
Unique NameFC931953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14388 contig Ccv1_Contig14388:101..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931953 vs. ExPASy Swiss-Prot
Match: MGST3_MOUSE (Microsomal glutathione S-transferase 3 OS=Mus musculus GN=Mgst3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 56/131 (42.75%), Postives = 75/131 (57.25%), Query Frame = 3
Query:   81 LPTEYGYVALVLVFYCFLNFWMGFQVGAARKKYKVSYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLKHPCVCAVLGSLFTVTRFFYFKGYATGDPQKRL--AIGKYGFLALLGLMVCT 467
            L  EYG+V L       +   +   VG ARKKYKV YP +Y+ + EN    +FNC+QR HQN+LE+ P F   + VGG+ HP + + LG  + + R  Y  GY TGDP KR   A+G     AL+G  VC+
Sbjct:    4 LSKEYGFVLLTGAASFVMVLHLAINVGKARKKYKVEYPVMYSTDPEN--GHMFNCIQRAHQNTLEVYPPFLFFLTVGGVYHPRIASGLGLAWIIGRVLYAYGYYTGDPSKRYRGAVGSLALFALMGTTVCS 132          
BLAST of FC931953 vs. ExPASy Swiss-Prot
Match: MGST3_BOVIN (Microsomal glutathione S-transferase 3 OS=Bos taurus GN=MGST3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.054e-23
Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   81 LPTEYGYVALVLVFYCFLNFWMGFQVGAARKKYKVSYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLKHPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLAIGKYGFLALLGLMVCTISFGINQL 491
            L  EYG+V L       +   +   V  ARKKYKV YPT+Y+ + EN    +FNC+QR HQN+LE+ P F   + VGG+ HP + + LG  + V R  Y  GY TG+P+KR   G   F+AL+GLM  T+      L
Sbjct:    4 LSKEYGFVILTGAASFLMVTHLAINVSKARKKYKVEYPTMYSTDPEN--GHIFNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRIVSGLGLAWIVGRVLYAYGYYTGEPRKRQR-GALSFIALIGLMGTTVCSAFQHL 137          
BLAST of FC931953 vs. ExPASy Swiss-Prot
Match: MGST3_HUMAN (Microsomal glutathione S-transferase 3 OS=Homo sapiens GN=MGST3 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.377e-22
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 3
Query:   81 LPTEYGYVALVLVFYCFLNFWMGFQVGAARKKYKVSYPTLYAVESENKEAKLFNCVQRGHQNSLELMPVFFMLMIVGGLKHPCVCAVLGSLFTVTRFFYFKGYATGDPQKRLAIGKYGFLALLGLMVCTISFGINQL 491
            L  EYG+V L       +   +   V  ARKKYKV YP +Y+ + EN    +FNC+QR HQN+LE+ P F   + VGG+ HP + + LG  + V R  Y  GY TG+P KR + G  G +ALLGL+  T+      L
Sbjct:    4 LSKEYGFVLLTGAASFIMVAHLAINVSKARKKYKVEYPIMYSTDPEN--GHIFNCIQRAHQNTLEVYPPFLFFLAVGGVYHPRIASGLGLAWIVGRVLYAYGYYTGEPSKR-SRGALGSIALLGLVGTTVCSAFQHL 137          
The following BLAST results are available for this feature:
BLAST of FC931953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MGST3_MOUSE1.050e-2342.75Microsomal glutathione S-transferase 3 OS=Mus musc... [more]
MGST3_BOVIN3.054e-2342.34Microsomal glutathione S-transferase 3 OS=Bos taur... [more]
MGST3_HUMAN3.377e-2241.61Microsomal glutathione S-transferase 3 OS=Homo sap... [more]
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Properties
Property NameValue
Genbank descriptionC34202H12EF PostHarveN Citrus clementina cDNA clone C34202H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931953 ID=FC931953; Name=FC931953; organism=Citrus clementina; type=EST; length=787bp
GATCGTTAGTTGGTCAACGTTGTCTCTTGGGTGAGATGTTTTCATCGATC
GACTCGACTGTGGCGGCTGCAACTCAATTTCTACCAACAGAATACGGATA
TGTGGCTCTTGTTCTTGTTTTCTACTGCTTTCTCAATTTCTGGATGGGTT
TTCAAGTCGGAGCTGCCCGCAAGAAGTATAAGGTGTCCTATCCTACCCTC
TACGCTGTAGAATCTGAGAACAAAGAAGCTAAGCTCTTTAACTGCGTTCA
GAGAGGGCATCAGAACTCTTTGGAACTTATGCCGGTGTTTTTCATGTTGA
TGATAGTCGGAGGGCTAAAGCATCCATGTGTTTGTGCCGTACTCGGATCC
CTTTTCACTGTCACTCGTTTTTTCTACTTCAAAGGCTATGCTACTGGCGA
TCCTCAGAAACGCCTCGCTATTGGGAAATATGGATTCTTGGCTTTGCTTG
GACTTATGGTTTGCACAATTTCATTTGGGATCAATCAGCTTCGAGGATAA
ACACTTGTAGTTCATCCTTTCTTTTGCATGGGACTCGCTTTCCCTCTATC
CATCTTTTTTATTCTCTATTTCTCTGGTAGCAGTTTTATGTTTTTGTGTT
GGTAGCAAAACTACATGCTGAAATTCTGTCAAAGTCCGTTGACATACTCT
AATCACTTTGCTGCATGGCGCAAGCATAAGCTCATAGTTGACACTGTTGT
CATTAGAGCTTATTGTCATTACATAACGTGTAGTTTGGAAGTACATCGTA
CTTTTGTTTTGAGCGACTAATGTCTGAAGATTCATTT
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