FC931961

Overview
NameFC931961
Unique NameFC931961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14675 contig Ccv1_Contig14675:502..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931961 vs. ExPASy Swiss-Prot
Match: YM9I_CAEEL (Putative serine protease F56F10.1 OS=Caenorhabditis elegans GN=F56F10.1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   15 SWP*MQSCTTENLKYLSSKQALFDLAIFRQRYQESLNLKLKRGDAENTWFVFGISYPGALSAWFRLKFPHLTCGSLASSAVVQAIYNFTEF 287
            SWP +    T +L+YL+++QAL DLA F +   +    K  R      W  FG SYPG+L+AWFR K+P LT GS+ASSA V    +F E+
Sbjct:  135 SWP-IPDMQTSSLRYLTTQQALADLAFFIEFMNQQYGFKNPR------WVTFGGSYPGSLAAWFRQKYPQLTVGSVASSAPVNLKLDFYEY 218          
BLAST of FC931961 vs. ExPASy Swiss-Prot
Match: TSSP_MOUSE (Thymus-specific serine protease OS=Mus musculus GN=Prss16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 3
Query:   51 LKYLSSKQALFDLAIFRQRYQESLNLKLKRGDAENTWFVFGISYPGALSAWFRLKFPHLTCGSLASSAVVQAIYNFTEFDQ-------QIGVSAGPEC-KAVKTMFDAAE 356
            L+YLSS+ AL D+A  RQ     LN+      + + W  FG SY G+L+ W RLKFPHL   ++ASSA + A+ +F+ ++Q       Q+ +    EC  A  T F   E
Sbjct:  147 LRYLSSRHALADVASARQALSGLLNVS-----SSSPWICFGGSYAGSLATWARLKFPHLVFAAVASSAPLSAVVDFSAYNQVVARSLTQVAIGGSLECLAAASTAFTEVE 251          
BLAST of FC931961 vs. ExPASy Swiss-Prot
Match: TSSP_HUMAN (Thymus-specific serine protease OS=Homo sapiens GN=PRSS16 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 49/149 (32.89%), Postives = 71/149 (47.65%), Query Frame = 3
Query:   51 LKYLSSKQALFDLAIFRQRYQESLNLKLKRGDAENTWFVFGISYPGALSAWFRLKFPHLTCGSLASSAVVQAIYNFTEFDQQI-------GVSAGPECK-AVKTMFDAAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGE 473
            L++LSS+ AL D+   R       N+      + + W  FG SY G+L+AW RLKFPHL   S+ASSA V+A+ +F+E++  +        +    EC+ AV   F   E  +          AA  A +       C PL  A+N  E
Sbjct:  148 LRFLSSRLALADVVSARLALSRLFNIS-----SSSPWICFGGSYAGSLAAWARLKFPHLIFASVASSAPVRAVLDFSEYNDVVSRSLMSTAIGGSLECRAAVSVAFAEVERRLRS------GGAAQAALR--TELSACGPLGRAENQAE 283          
The following BLAST results are available for this feature:
BLAST of FC931961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YM9I_CAEEL5.663e-1345.05Putative serine protease F56F10.1 OS=Caenorhabditi... [more]
TSSP_MOUSE6.262e-1238.18Thymus-specific serine protease OS=Mus musculus GN... [more]
TSSP_HUMAN6.923e-1132.89Thymus-specific serine protease OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionC34203A08EF PostHarveN Citrus clementina cDNA clone C34203A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931961 ID=FC931961; Name=FC931961; organism=Citrus clementina; type=EST; length=733bp
CTCGATCATTTCTCAGCTGGCCCTGAATGCAAAGCTGCACTACAGAAAAT
TTGAAATATCTTTCATCTAAGCAGGCACTCTTTGACTTGGCCATTTTCCG
ACAGCGTTATCAGGAATCTTTAAACCTGAAGCTCAAAAGAGGAGATGCTG
AGAATACGTGGTTTGTTTTTGGTATTTCATATCCTGGAGCCCTTAGTGCA
TGGTTTCGTCTCAAATTTCCTCATCTAACGTGTGGAAGTCTTGCAAGTTC
TGCAGTCGTTCAGGCAATTTACAACTTCACTGAATTTGATCAGCAGATTG
GTGTCTCAGCTGGCCCTGAATGCAAAGCTGTGAAGACAATGTTCGATGCA
GCTGAGCTTGAGATAGAGGGTGATTTCCTGTATTTTCTGGCAGATGCTGC
AGTTACAGCGTTTCAATATGGAAATCCAGATAAACTGTGCACCCCACTTG
TTGAAGCTAAGAATGCTGGAGAGGATTTGGTGGATGCATATGCCAAATTC
GTCAAAGAGTATTACCTTGGAAGTTTTGGTGCCAGTGTTCAGACATACAA
TCAGAAACGCTTGAAGAATACTGCTGTTACTGATCAGAGCGCTGATCGGT
TGTGGTGGTTCCAAGTTTGCACTGAAGTTGCATTTTTTCAAGTGGCACCT
GNCAATGATGGCGTTCGCTCTTCAAAGTGGATACAGATATCATCTGGACC
CTTTGCAGATGTCTTTGGAGAGGCATCTATCCT
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