FC931969

Overview
NameFC931969
Unique NameFC931969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931969_ssr182 microsatellite FC931969_ssr182:182..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6635 contig Ccv1_Contig6635:192..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.111e-33
Identity = 70/110 (63.64%), Postives = 88/110 (80.00%), Query Frame = 2
Query:  380 QFSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDESELQQALS-SGYQRFSLSTIRLLMFLFKNPHDSL-RIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDA 703
            QFS+Y    F P THP+++RSFE  DR+RSGF++ESEL+QALS SGY   S  TIRLL+F++K P DSL R+GPKE+ +LW+CL QWRAIF RYDRDRSGK++  +LRDA
Sbjct:   41 QFSSYS-GMFSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDA 149          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.731e-28
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = 2
Query:  383 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDESELQQALSSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            F++   SAFPPGT P+++  F+  DRD SGFID+ ELQ ALSS  Q FS+ T+ LLM+LF N  +  +IGPKEF  L+  L  WR+IFER+D+DRSG+ID  ELRDAL
Sbjct:  153 FASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTN-SNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDAL 259          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 60/108 (55.56%), Postives = 80/108 (74.07%), Query Frame = 2
Query:  383 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDESELQQALSSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            F++   S F PGT P+++  F+  D+D SGFID+ ELQ ALSS  QRFS+ T+ LLM+LF N  ++++IGPKEF  L+  L  WR+IFER D+DRSG+ID+ ELRDAL
Sbjct:  172 FASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTN-SNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDAL 278          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 46/114 (40.35%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  380 QFSAYGHSA----FPPGTHPDVIRSFEMVDRDRSGFIDESELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            Q  +YG  A     PPG  P+    F+ VD D SG+I   EL+QAL ++ +  F+  T  ++M +F +  +S RI    F+ LW  + QWR +F++YDRDRSG I+  EL  AL
Sbjct:   97 QHGSYGQGAPAGNIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMF-DKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQAL 209          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 2
Query:  392 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDESELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F       RI    F+ LW  L QWR +F++YDRDRSG I   EL+ AL
Sbjct:   97 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSG-RIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQAL 201          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  392 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDESELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F       RI    F+ LW  L QW+ +F++YDRD SG I   EL+ AL
Sbjct:  105 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTG-RIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQAL 209          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 2
Query:  392 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDESELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            YG    PP   P+    F+ VD D SG+I   EL+QAL +  +  F+  T  +++ +F       RI    F+ LW  + QW+ +F++YDRDRSG I   EL+ AL
Sbjct:  106 YGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSG-RIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQAL 210          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  410 PPGTHPDVIRSFEMVDRDRSGFIDESELQQALSS-GYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            PPG +P+  + F  VD D+SG+I+  EL+QAL +     F+  T  +++ +F       R+    F+ LW+ L QWRA F+++DRDRSG I+  E+  AL
Sbjct:   98 PPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSG-RVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQAL 196          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: PDCD6_MOUSE (Programmed cell death protein 6 OS=Mus musculus GN=Pdcd6 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  443 FEMVDRDRSGFIDESELQQALSSG-YQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            F+ VD+DRSG I ++ELQQALS+G +  F+  T+R ++ +F   + +  +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL
Sbjct:   32 FQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKA-GVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119          
BLAST of FC931969 vs. ExPASy Swiss-Prot
Match: PDCD6_HUMAN (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  443 FEMVDRDRSGFIDESELQQALSSG-YQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDAL 706
            F+ VD+DRSG I ++ELQQALS+G +  F+  T+R ++ +F   + +  +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL
Sbjct:   32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKA-GVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQAL 119          
The following BLAST results are available for this feature:
BLAST of FC931969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CML48_ARATH6.111e-3363.64Probable calcium-binding protein CML48 OS=Arabidop... [more]
CML49_ARATH7.731e-2857.41Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.116e-2655.56Probable calcium-binding protein CML50 OS=Arabidop... [more]
PEF1_XENLA2.852e-1440.35Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE2.852e-1440.57Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_RAT4.118e-1338.68Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
PEF1_HUMAN4.118e-1337.74Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
PEF1_DANRE1.198e-1239.00Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
PDCD6_MOUSE5.947e-1241.57Programmed cell death protein 6 OS=Mus musculus GN... [more]
PDCD6_HUMAN5.947e-1241.57Programmed cell death protein 6 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionC34203B05EF PostHarveN Citrus clementina cDNA clone C34203B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931969 ID=FC931969; Name=FC931969; organism=Citrus clementina; type=EST; length=707bp
GATAATTTGAAAAAATTTAAATAGTTTCGAATTTCATCCATCACGTTCCT
TCAGGAATTCCAGAAGTCTCTCTCACTTCTCACGTTTGTGATCTTGTTCT
GCTCTGCTCATAGCGTTGACGTTTTAATTTTTGTAAGTAAATTATTAAAA
AATCCGGTACCAAATCACAAATCATAATCACCATCATCATCATCGAATGT
CAAATTACAGCGGATCCTACTCTTCATCTCAATCCTACGCGCCCTCTGCG
CCTTCTCTGCCGGAGACCCACAACAACTCCTCTTACAATAACTCATCTTC
GGCTCAAAGCTATTATGCCCAGCCTCCTCCGCCTCCGCCGCCGTCGCAGC
AGCAGCCGTACCCCGCGCCGAGTCACGGGCAGTTTTCGGCGTATGGGCAC
TCCGCGTTTCCGCCGGGGACCCACCCAGATGTGATAAGGAGCTTTGAAAT
GGTTGATAGAGATAGAAGTGGGTTTATTGATGAGAGTGAGTTGCAGCAAG
CACTTTCTTCTGGGTACCAGAGGTTTAGTCTCAGTACTATTAGATTGCTC
ATGTTTCTTTTCAAGAATCCTCATGATTCCTTGAGAATTGGGCCTAAAGA
ATTTGCTGATTTGTGGAGTTGCCTTGGTCAATGGCGCGCTATATTTGAGA
GATATGATCGAGACAGAAGTGGGAAAATTGATCTGATGGAATTGAGGGAT
GCTCTCT
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