FC931992

Overview
NameFC931992
Unique NameFC931992
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13819 contig Ccv1_Contig13819:35..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931992 vs. ExPASy Swiss-Prot
Match: Y1295_ARATH (Uncharacterized PKHD-type hydroxylase At1g22950 OS=Arabidopsis thaliana GN=At1g22950 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.794e-58
Identity = 112/224 (50.00%), Postives = 158/224 (70.54%), Query Frame = 1 
Query:   13 TMALEASIDRRNHAQSATTNGAVVLPPASYRLRLNPSSEHKPDSYDDLHQLEFTPLLFSSLERYLPPTMLSMSRDVKFQYMRDILMKYSRDGERTRVQRHKEYRQRIISNYQPLHRELFTMHAPSVLVPAFVKAVRDNTEASFRSIMAEPIPGIYTFEMLQPRFCEMLLSEVENFERWVHDTRFRIMRPNTMNKFGAVLDDFGLETMLG*LMNDFIRPISKVSF 684
            +MAL++S  +    Q      +     A  +LR  P+ EH+P++Y+DL  L+++P LF+SLERYLP  +L+ +R  K  +MRD+L++YS D ER RV RHKEYR +I+S+YQ LH E++T+   S   P+F+ A    +E +FRS M E  PGI+TFEM +P+FCEMLL+EVE+ E+WV+D+R  IMRPNTMN FG VLDDFG ++ML  L++DFI PI++V F
Sbjct:    9 SMALDSSGKQPEQQQQQQPRASSGNGEARLKLRRTPNEEHEPENYEDL-PLDYSPSLFTSLERYLPEQLLNSTRIDKASFMRDLLLRYSPDTERVRVLRHKEYRDKIMSSYQRLHGEIYTLDPSSFFAPSFLGAFSRKSEPNFRSSMVESYPGIFTFEMFKPQFCEMLLAEVEHMEKWVYDSRSTIMRPNTMNNFGVVLDDFGFDSMLQKLVDDFISPIAQVLF 231
The following BLAST results are available for this feature:
BLAST of FC931992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1295_ARATH1.794e-5850.00Uncharacterized PKHD-type hydroxylase At1g22950 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34203E01EF PostHarveN Citrus clementina cDNA clone C34203E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931992 ID=FC931992; Name=FC931992; organism=Citrus clementina; type=EST; length=687bp
GATACCATTATTACGATGGCTCTCGAAGCTTCCATAGACCGGAGAAATCA
CGCACAGTCCGCAACGACAAACGGGGCCGTCGTTTTGCCGCCTGCGTCGT
ACCGACTGAGACTGAACCCTAGCTCCGAGCACAAGCCAGATAGCTACGAT
GACCTTCATCAATTGGAGTTCACTCCTCTCCTCTTCAGCTCGCTTGAACG
CTACTTGCCTCCTACCATGCTCTCCATGTCACGTGACGTCAAGTTCCAGT
ACATGCGCGATATCTTGATGAAATACTCCCGTGACGGTGAACGGACACGT
GTTCAGAGGCACAAAGAGTACAGACAGAGGATAATATCAAATTATCAGCC
TCTTCACAGGGAGCTGTTTACCATGCACGCTCCCAGTGTCCTTGTCCCCG
CTTTTGTCAAAGCAGTTCGTGATAATACAGAGGCAAGTTTTAGAAGCATA
ATGGCTGAACCCATTCCAGGAATATATACATTTGAAATGCTTCAGCCGCG
TTTCTGCGAAATGTTGCTATCCGAGGTAGAGAACTTTGAAAGATGGGTGC
ATGATACAAGATTCAGAATCATGCGACCAAACACAATGAACAAATTTGGT
GCTGTTCTTGATGACTTTGGCCTAGAAACCATGCTGGGATAGTTGATGAA
TGACTTTATACGTCCTATATCCAAAGTTTCTTTCCTG
back to top