FC932039

Overview
NameFC932039
Unique NameFC932039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10851 contig Ccv1_Contig10851:3..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC932039 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.798e-56
Identity = 103/197 (52.28%), Postives = 138/197 (70.05%), Query Frame = 3 
Query:   96 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLADALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHE---GPQSYVTGIPVPP 674
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLL DA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ VPP
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVPP 195

HSP 2 Score: 44.2838 bits (103), Expect = 2.798e-56
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 2 
Query:  695 DLFPGPGAGMYPRRGGFWRDGEHAIGP 775
            DLFPGPGAGMYP RGGF  DG   +GP
Sbjct:  204 DLFPGPGAGMYPGRGGF-GDGSMLVGP 229
The following BLAST results are available for this feature:
BLAST of FC932039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH2.798e-5652.28Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC34204A04EF PostHarveN Citrus clementina cDNA clone C34204A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932039 ID=FC932039; Name=FC932039; organism=Citrus clementina; type=EST; length=782bp
GGACTAAACACACCATCAAATTTGCAGACATTCGAAACAAGACCTCGCTC
TCTCATAAACTCTAAAAACAAAGAAAGGAAAAAGATTAAAAAAAAATGCC
GAACGAGAAATCAGTGATGGCCGTGATAAGAGCGGCAAGACCTACCTTTA
GAAACGACTTCGATAAAATTGCATTTGTCGTTCACGCCTCTTTCCTTGCC
AGTGGACACGTGTTAACCGCCACTGGCCCTGCCGCGGACACCGAGTTCAC
CTCTCCCTCCTCCTCCACCGATGAAGTAGGAATTGATCACTGGAACGAAC
TAGCTGATGATAATTACGCGTTTCTGTTTATAAACCCTGAGAAAGGTTCA
AAGAAAGTGTTGGTGAAGTGTCTCGTGATGAACAGTAAATTGCTGGCTGA
TGCATTAGCTGAGGGAGCTTCGGAGCCTGTGCATCTCGAAATCAATGTTG
CAGACTACGTTGCAGAAAATGGAGGCAATTACTCTGATAAGTTCAAGAAT
TTAGAGAAGCTTGTGACAGATCTTGATAAAGACATTATTTCAAAATTATA
CGGCTCCCCAAAAACAGCTAGCTCGGAAAGATGTGAAGGATCAAGGCCTA
TTGTAACCGATCCTGCTTTTGGATTTGAGCATGAAGGGCCTCAATCTTAT
GTTACAGGAATTCCTGTTCCTCCCTATCACCCAGTCGTAGTAGCGATCTT
TTTCCTGGCCCTGGTGCTGGAATGTATCCTAGAAGGGGTGGCTTTTGGCG
TGATGGGGAGCATGCTATAGGACCTGATCATC
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