FC932044

Overview
NameFC932044
Unique NameFC932044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: YAI9_SCHPO (UPF0041 protein C24B11.09 OS=Schizosaccharomyces pombe GN=SPAC24B11.09 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.677e-30
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  342 FQRLWNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQSDSTVEAAKVIE 659
            F+R WN P G KTVHFWAP MKW LV++GI D+AR  E LS+ Q AAL  TGAIWTRW  I++P+N   A VNFFL  VGAVQV+RI ++QR Q   T ++ +  E
Sbjct:    6 FKRFWNHPAGPKTVHFWAPAMKWTLVLSGIGDYARSPEYLSIRQYAALCATGAIWTRWSLIVRPKNYFNATVNFFLAIVGAVQVSRILVYQRQQKRITAQSEQRTE 111          
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: FMP43_YEAST (UPF0041 protein FMP43 OS=Saccharomyces cerevisiae GN=FMP43 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 62/124 (50.00%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  339 AFQRLWNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQSDSTVEAAKVI---EHEAVDSVKATAEAT 701
            AF+R WNS  G KTVHFWAP +KW LV AG++D  RP EK+S  QN +L+ T  IWTRW F+IKP+N LLA+VNFFLGC     +TRI  ++    DS  +    I   E  A  + K TA  +
Sbjct:    9 AFRRFWNSETGPKTVHFWAPTLKWGLVFAGLNDIKRPVEKVSGAQNLSLLATALIWTRWSFVIKPKNYLLASVNFFLGCTAGYHLTRIANFRIRNGDSFKQVIHYIIKGETPAAVAAKQTASTS 132          
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: YHW2_YEAST (UPF0041 protein YHR162W OS=Saccharomyces cerevisiae GN=YHR162W PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  339 AFQRLWNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQSDSTVEAAKVIEHEAVDSVK 683
            AF+R W S  G KTVHFWAP +KW LV AG SD  RP EK+S  QN +L+ T  IWTRW F+IKPRN+LLA+VN FL      Q+ RI  ++    DS  +    I   A +S K
Sbjct:    9 AFRRFWQSETGPKTVHFWAPTLKWGLVFAGFSDMKRPVEKISGAQNLSLLSTALIWTRWSFVIKPRNILLASVNSFLCLTAGYQLGRIANYRIRNGDSISQLCSYILSGADESKK 123          
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: YXX3_CAEEL (UPF0041 protein F53F10.3 OS=Caenorhabditis elegans GN=F53F10.3 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.717e-24
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  354 WNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQSD 629
            WN   G KTV FWAP +KW L+ AG++D ARPA+KLSL QN+AL  TGAIWTR+C +I P N  L++VNFF+ C G  Q+ RI  ++    D
Sbjct:   31 WNHAAGPKTVFFWAPTIKWTLIGAGLADLARPADKLSLYQNSALFATGAIWTRYCLVITPINYYLSSVNFFVMCTGLAQLCRIAHYRYQNPD 122          
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: BR44_HUMAN (Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  351 LWNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQ 623
            L+N P G +TV FWAP+MKW LV AG++D ARPAEKLS  Q+A LM TG IW+R+  +I P+N  L AVNFF+G  GA Q+ RI  W+ +Q
Sbjct:   31 LYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRI--WRYNQ 119          
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: BR44_RAT (Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 3
Query:  351 LWNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQ 623
            L+N P G +TV FWAP+MKW LV AG++D ARPAEKLS  Q+  LM TG IW+R+  +I P+N  L AVNFF+G  GA Q+ RI  W+ +Q
Sbjct:   31 LYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFRI--WKYNQ 119          
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: BR44_MOUSE (Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 3
Query:  351 LWNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQ 623
            L+N P G +TV FWAP+MKW LV AG++D ARPAEKLS  Q+  LM TG IW+R+  +I P+N  L AVNFF+G  GA Q+ RI  W+ +Q
Sbjct:   31 LYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLSTAQSTVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGSAGASQLFRI--WRYNQ 119          
BLAST of FC932044 vs. ExPASy Swiss-Prot
Match: BR44_PONAB (Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.120e-21
Identity = 51/91 (56.04%), Postives = 65/91 (71.43%), Query Frame = 3
Query:  351 LWNSPVGVKTVHFWAPVMKWCLVVAGISDFARPAEKLSLTQNAALMGTGAIWTRWCFIIKPRNVLLAAVNFFLGCVGAVQVTRIFLWQRSQ 623
            L+N P G +TV FWAP+MK  LV AG++D ARPAEKLS  Q+A LM TG IW+R+  +I P+N  L AVNFF+G  GA Q+ RI  W+ +Q
Sbjct:   31 LYNHPAGPRTVFFWAPIMKRGLVCAGLADMARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRI--WRYNQ 119          
The following BLAST results are available for this feature:
BLAST of FC932044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YAI9_SCHPO3.677e-3057.55UPF0041 protein C24B11.09 OS=Schizosaccharomyces p... [more]
FMP43_YEAST2.018e-2850.00UPF0041 protein FMP43 OS=Saccharomyces cerevisiae ... [more]
YHW2_YEAST9.373e-2650.43UPF0041 protein YHR162W OS=Saccharomyces cerevisia... [more]
YXX3_CAEEL6.717e-2454.35UPF0041 protein F53F10.3 OS=Caenorhabditis elegans... [more]
BR44_HUMAN7.427e-2357.14Brain protein 44 OS=Homo sapiens GN=BRP44 PE=1 SV=... [more]
BR44_RAT2.822e-2256.04Brain protein 44 OS=Rattus norvegicus GN=Brp44 PE=... [more]
BR44_MOUSE2.822e-2256.04Brain protein 44 OS=Mus musculus GN=Brp44 PE=1 SV=... [more]
BR44_PONAB3.120e-2156.04Brain protein 44 OS=Pongo abelii GN=BRP44 PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC34204A09EF PostHarveN Citrus clementina cDNA clone C34204A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932044 ID=FC932044; Name=FC932044; organism=Citrus clementina; type=EST; length=705bp
GGAGGGATAGTCCCTCACAGACAATCACACTAAGAGCTTGCTGTAGTATT
CGTTCCCTCCTTTACAGGCCATCTTTTTATCTACCTCCGGTTGGGGGAGT
CAACTGCCCAATCTAGCCCCCCCAGCGGAAAAGTCCCTCTTCCACCGATC
ACGAAAAATCCATCTTCCCTCTCACTAGAACCACCATCTCCGCTATCATA
ATGTCGTCTCGCGTGGGTTTCCGCTTCGTGAACAACGCTCGCTTTGCCTT
CCGCAATGCCTCCGCGCCATTTCGCCGGCCGGGTGCTCAGGGCTTCCGCT
GGCAGAGCTCCGAAGCCGGTGCTGGGGAGCAGCAGAACGCCTTCCAACGC
CTATGGAACAGCCCTGTTGGTGTGAAGACTGTCCACTTCTGGGCCCCGGT
TATGAAGTGGTGTCTGGTCGTCGCCGGTATCTCCGACTTCGCCCGTCCCG
CCGAGAAGCTCTCGCTCACCCAGAATGCTGCTCTGATGGGCACTGGTGCC
ATCTGGACTCGCTGGTGCTTTATCATCAAGCCCCGTAACGTACTGCTCGC
TGCCGTGAACTTCTTCCTCGGATGCGTGGGCGCCGTCCAGGTGACTCGTA
TCTTCCTGTGGCAGCGCAGCCAGTCTGACTCAACTGTCGAAGCCGCCAAG
GTGATTGAGCATGAAGCTGTTGACTCCGTCAAGGCCACCGCCGAAGCGAC
CCGCG
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