FC932045

Overview
NameFC932045
Unique NameFC932045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5162 contig Ccv1_Contig5162:8..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932045 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.115e-35
Identity = 76/157 (48.41%), Postives = 98/157 (62.42%), Query Frame = 1
Query:  160 RTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKRKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRXXXXXXXXXXXXXDTLFDTVEKELSEKNSISY 630
            R IPG+YG P++GPI DR DYF+ QG E FF+ RI K  STV+R N+PP    F+  NP V+A+LD KSF  LFD++ VEKK++  G +MPS + TGG R+ +YLD SEPKH +LK      LK                LFD++EKELS K    +
Sbjct:   55 RNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPG--AFIAENPQVVALLDGKSFPVLFDVDKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADF 209          
BLAST of FC932045 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.805e-34
Identity = 74/165 (44.85%), Postives = 99/165 (60.00%), Query Frame = 1
Query:  160 RTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKRKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRXXXXXXXXXXXXXDTLFDTVEKELSEKNSISYMVPLQNAS 654
            R IPG YG P +GPI DRLDYF+ QG E FF+ R++K KSTV+R N+PP    F+  NP VI +LD KSF  LFDM  VEKK++  G +MPS + TGG R+ +YLD SEP H +LK    + +K                L + VE +L+ K   ++  P + A+
Sbjct:   73 RQIPGDYGLPGIGPIQDRLDYFYNQGREEFFKSRLQKYKSTVYRANMPPG--PFIASNPRVIVLLDAKSFPVLFDMSKVEKKDLFTGTYMPSTELTGGYRILSYLDPSEPNHTKLKQLLFNLIKNRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAA 235          
BLAST of FC932045 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.853e-31
Identity = 73/158 (46.20%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  160 RTIPGSYGWPLLGPISDRLDYFWFQGP-ETFFRKRIEKRKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRXXXXXXXXXXXXXDTLFDTVEKELSEKNSISY 630
            R IPGSYG P   PI DRL+YF+  G  + +FR R++K +STVFR N+PP    F++ NP VI +LD KSF  LFD+  VEKK++  G +MPS K TGG RV +YLD SEP+HAQLK      LK                LF+ +E EL++    ++
Sbjct:    9 REIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPG--PFVSSNPKVIVLLDAKSFPILFDVSKVEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAF 164          
BLAST of FC932045 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.328e-29
Identity = 68/165 (41.21%), Postives = 93/165 (56.36%), Query Frame = 1
Query:  160 RTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKRKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRXXXXXXXXXXXXXDTLFDTVEKELSEKNSISYMVPLQNAS 654
            R +PGSYG P +  + DRLD+++ QG + +F  R E+  STV R N+PP    F+  +P V+A+LD KSF  LFD+  VEK+++  G FMPS   TGG RV AYLD SEP HA++K   +  L                 L DTVE +L+     S    L +A+
Sbjct:   10 RPVPGSYGVPFVSAVRDRLDFYYLQGQDKYFESRAERYGSTVVRINVPPG--PFMARDPRVVALLDAKSFPVLFDVAKVEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDAT 172          
BLAST of FC932045 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.774e-25
Identity = 66/172 (38.37%), Postives = 93/172 (54.07%), Query Frame = 1
Query:  160 RTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKRK-STVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRXXXXXXXXXXXXXDTLFDTVEKELS-----EKNSISYMVPLQNASL 657
            R IPG YG P   P+ DRLDYF+FQG E +FR R+ +   +TV R N+PP    F++ NP V+A+LD +SF  L D  +V+K + L G +MPS    GG R  A+LD ++P+HA++K   M                    +FD VE  L       K ++ YM+    A+L
Sbjct:   30 REIPGGYGVPFFSPLRDRLDYFYFQGAEEYFRSRVARHGGATVLRVNMPPG--PFISGNPRVVALLDARSFRVLLDDSMVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDAVEAGLGAAVEFNKLNMRYMLDFTCAAL 199          
BLAST of FC932045 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 61/150 (40.67%), Postives = 85/150 (56.67%), Query Frame = 1
Query:  160 RTIPGSYGWPLLGPISDRLDYFWFQGPETFFRKRIEKRK-STVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRXXXXXXXXXXXXXDTLFDTVEKEL 606
            R IPG YG P L P+ DRLDY++FQG + FFR R+ +   +TV R N+PP    FL  +P V+A+LD +SF  L D  +V+K + L G FMPS+   GG R  A+LD ++P+HA++K   M                    +FD V+  L
Sbjct:   30 REIPGGYGVPFLSPLRDRLDYYYFQGADEFFRSRVARHGGATVLRVNMPPG--PFLAGDPRVVALLDARSFRVLLDDSMVDKADTLDGTFMPSLALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDEVDAGL 177          
BLAST of FC932045 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.857e-23
Identity = 62/160 (38.75%), Postives = 84/160 (52.50%), Query Frame = 1
Query:  160 RTIPGSYGWPLLGPISDRLDYFWFQGP-ETFFRKRIEKRKSTVFRTNIPPTWPLFLNVNPNVIAVLDCKSFAHLFDMEIVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRXXXXXXXXXXXXXDTLFDTVEKELSEKNSISYMV 636
            R +PG YG P++G I DR +YF+  G  + FF  R+   +STV R N+PP    F+  +P V+A+LD  SF  LFD  +V+K ++  G FMPS   TGG RV +YLD SEP HA LK      L                 LF  +E +L+      + V
Sbjct:   48 RKVPGDYGPPVVGAIRDRYEYFYGPGGRDGFFAARVRAHRSTVVRLNMPPG--PFVARDPRVVALLDAASFPVLFDTSLVDKTDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAPLKTLLFYLLSHRRQQVIPKFREVYGDLFGLMENDLARVGKADFGV 205          
The following BLAST results are available for this feature:
BLAST of FC932045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74A_ARATH2.115e-3548.41Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
CP74_LINUS6.805e-3444.85Allene oxide synthase, chloroplastic OS=Linum usit... [more]
C74A2_PARAR1.853e-3146.20Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A2_ORYSJ1.328e-2941.21Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A3_ORYSJ5.774e-2538.37Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
C74A4_ORYSJ2.866e-2440.67Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
C74A1_ORYSJ1.857e-2338.75Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
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Properties
Property NameValue
Genbank descriptionC34204A10EF PostHarveN Citrus clementina cDNA clone C34204A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932045 ID=FC932045; Name=FC932045; organism=Citrus clementina; type=EST; length=685bp
TATCAGAAGATAACACACCAATCCAAGCTCAATATGAATGCCTCCATGAT
GATGATAAACTCAATGAGCGTATCACCAGACATGCCCTCATCATCGCCCT
TCCAGTCACAGTCGCTCTCCACACCCACTTCATCACCACCGTCCACGTCG
CTCCCGCTCCGAACAATCCCCGGATCCTACGGCTGGCCCCTTCTGGGCCC
CATCTCCGACCGCCTCGACTATTTCTGGTTCCAGGGTCCTGAAACTTTCT
TCAGAAAACGCATTGAAAAGCGCAAGAGCACGGTGTTCCGTACAAACATA
CCACCCACGTGGCCTTTGTTTCTCAACGTAAACCCCAATGTCATTGCTGT
TCTTGACTGCAAATCTTTTGCTCATCTCTTTGATATGGAGATTGTGGAGA
AGAAAAATATTCTTGTTGGTGATTTCATGCCCAGTGTTAAGTTTACAGGA
GGCTTGAGGGTTAGTGCTTATCTTGATACTTCTGAGCCTAAACATGCCCA
GCTCAAAGGCTTCGCCATGGACACTCTGAAAAGAAGCTCANAATTATGGG
TATCAGAAGTGGTATCAAGTCTGGACACACTGTTCGACACCGTCGAGAAA
GAGCTCTCCGAAAAGAACAGCATAAGCTACATGGTCCCTTTACAAAATGC
GTCTTTAACTTCCTCTCAAATCGATCGTGGGAGCC
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