FC932063

Overview
NameFC932063
Unique NameFC932063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932063_ssr107 microsatellite FC932063_ssr107:107..120. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC932063 vs. ExPASy Swiss-Prot
Match: ATPD_TOBAC (ATP synthase delta chain, chloroplastic OS=Nicotiana tabacum GN=ATPD PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.230e-33
Identity = 70/119 (58.82%), Postives = 93/119 (78.15%), Query Frame = 2
Query:  314 RRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAV 670
            R  GA G +M A+ A SYA AL D+AK+N TLE T+AD+EKIEKI  ++ +  FFV+P +  EKKRE+VDEI  SS++QP   NFLNIL+D KRV+++K+IVKEFE+VYN +T+TE+AV
Sbjct:   52 RGGGAAGSKMVASAAGSYANALADIAKSNGTLEQTTADLEKIEKISDDEAVFNFFVSPIVGEEKKRELVDEIVSSSSIQPHVANFLNILVDMKRVELIKEIVKEFEKVYNTLTDTELAV 170          
BLAST of FC932063 vs. ExPASy Swiss-Prot
Match: ATPD_SPIOL (ATP synthase delta chain, chloroplastic OS=Spinacia oleracea GN=ATPD PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.736e-31
Identity = 72/159 (45.28%), Postives = 105/159 (66.04%), Query Frame = 2
Query:  209 VSLQQTATLSLQSNLFPSGRAASRNPLSATIPSGPR-----RRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAV 670
            +S   T +     +L  S   A+ NPL   I +  +     R GA G RM  + A+ YA AL D+A    TLE+T++DVEK+ +IFSE+ ++ FF NP I I+ KR ++DEI  +S LQP T NF+NILID++R+++VK+I+ EFE+V+NK+T TE+AV
Sbjct:   21 LSTSSTTSTPKPFSLSFSSSTATFNPLRLKILTASKLTAKPRGGALGTRMVDSTASRYASALADVADVTGTLEATNSDVEKLIRIFSEEPVYYFFANPVISIDNKRSVLDEIITTSGLQPHTANFINILIDSERINLVKEILNEFEDVFNKITGTEVAV 179          
BLAST of FC932063 vs. ExPASy Swiss-Prot
Match: ATPD_PEA (ATP synthase delta chain, chloroplastic OS=Pisum sativum GN=ATPD PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.696e-29
Identity = 68/155 (43.87%), Postives = 102/155 (65.81%), Query Frame = 2
Query:  215 LQQTATLSLQSNLFPSGRAASRNPLSATIPSGPRRR---GAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMAV 670
            L +   L+L S+ F S +      L   +P    RR   GA G RMS+  A SYA AL DLA +NNTL++ +AD +KIE++FS+ ++ ++F +P ++   KR+++ E   +S  QP T NFLN+LID+KR+D++ DI+KEFE VYN +T+TE+ V
Sbjct:   23 LTRKPILNLSSSTFYSPKLK----LKLKLPLTKTRRSTGGALGARMSSLAAGSYAAALADLANSNNTLDAITADFDKIEQLFSDPKVFDYFSSPIVEDSTKRQLIGEFATTSGFQPHTHNFLNVLIDSKRIDMIIDIIKEFEFVYNTLTDTELVV 173          
BLAST of FC932063 vs. ExPASy Swiss-Prot
Match: ATPD_SORBI (ATP synthase delta chain, chloroplastic OS=Sorghum bicolor GN=ATPD PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 63/152 (41.45%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  227 ATLSLQSNLFPSG-RAASRNPLSATIPS----GPRRRGAHGIRMSATVATSYAIALVDLAKANNTLESTSADVEKIEKIFSEKQIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMA 667
            A  S  S   P+  R+AS    +  +PS     PRRRG      +   A SYA AL ++A  N TLE T +D+EK++KIF+++ + EFF NPT+  E+K  ++DEI KS  LQP   NF+N+++D  R  ++ +IV EFE ++N +T TE+A
Sbjct:   17 AAASASSGATPAAPRSASFARAARGLPSLRLAPPRRRGDLVRPRAEAAADSYASALSEVAVENGTLEQTVSDLEKLQKIFADETVAEFFDNPTVPREEKTALIDEIAKSYELQPHVVNFINVVVDNFRATILPEIVVEFENIFNSLTGTEVA 168          
BLAST of FC932063 vs. ExPASy Swiss-Prot
Match: ATPD_CHLRE (ATP synthase delta chain, chloroplastic OS=Chlamydomonas reinhardtii GN=ATPD PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 38/106 (35.85%), Postives = 68/106 (64.15%), Query Frame = 2
Query:  353 VATSYAIALVDLAKANNTLESTSADVEKIEKIFSEK-QIHEFFVNPTIDIEKKREMVDEICKSSALQPLTGNFLNILIDAKRVDVVKDIVKEFEEVYNKMTNTEMA 667
            V+ SYA ALV+LA     LE+  ADV+ +  +  E  ++    +NP ++ +KKR ++ +I K +  Q  T N+LN+L++  R+ +V +I + FE++Y +MT+T++A
Sbjct:   38 VSESYAKALVELADEKGKLEAVHADVDAVAGLMKENAKLSALIMNPVVESDKKRAVLAKIAKEAGFQQYTINWLNLLVEKDRLSLVPEICECFEDLYCQMTDTQVA 143          
The following BLAST results are available for this feature:
BLAST of FC932063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATPD_TOBAC3.230e-3358.82ATP synthase delta chain, chloroplastic OS=Nicotia... [more]
ATPD_SPIOL6.736e-3145.28ATP synthase delta chain, chloroplastic OS=Spinaci... [more]
ATPD_PEA3.696e-2943.87ATP synthase delta chain, chloroplastic OS=Pisum s... [more]
ATPD_SORBI6.106e-2441.45ATP synthase delta chain, chloroplastic OS=Sorghum... [more]
ATPD_CHLRE3.713e-1335.85ATP synthase delta chain, chloroplastic OS=Chlamyd... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34204C04EF PostHarveN Citrus clementina cDNA clone C34204C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932063 ID=FC932063; Name=FC932063; organism=Citrus clementina; type=EST; length=670bp
GACCCTTCACCACACTGACGATAACCCCCTATCGCTCCACCGCCCATTCC
TCTCAAAACCCCACATCTTCAGTCTTCACCTTCCACTCAATCCGTTCTTT
GATTGACTCTCTCTCTCTCTGGCTCTTTCTCTGTGTGCAGCAGAAGCAGC
AGCCTCAGCCTCAGCCGCTGCCTCAGCATCAGCATCGGCGTTCTCATCGC
GAAAAATGGTGTCTCTTCAGCAAACCGCAACCCTCTCACTCCAATCAAAC
CTCTTCCCCTCCGGCCGCGCGGCCTCTCGAAACCCATTATCCGCCACCAT
CCCCTCCGGCCCACGCCGGCGCGGCGCCCACGGAATCAGAATGTCAGCCA
CAGTGGCGACCAGCTACGCCATCGCGCTGGTGGACTTGGCGAAAGCGAAC
AACACCCTCGAGTCCACGAGCGCCGACGTGGAAAAGATCGAGAAAATCTT
CAGCGAGAAACAAATCCATGAGTTCTTCGTGAACCCCACCATCGATATCG
AGAAGAAAAGAGAGATGGTGGACGAGATATGCAAGTCGTCGGCGCTGCAG
CCGCTGACCGGGAATTTCTTGAACATACTGATCGACGCGAAGAGGGTGGA
CGTGGTGAAGGACATAGTGAAGGAGTTCGAGGAGGTGTATAATAAGATGA
CGAATACGGAGATGGCGGTG
back to top