FC932101

Overview
NameFC932101
Unique NameFC932101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15451 contig Ccv1_Contig15451:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 53/188 (28.19%), Postives = 83/188 (44.15%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFDSDTPQL 672
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K SC  + ISWNP           +G D  +P +
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNI 193          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 53/188 (28.19%), Postives = 83/188 (44.15%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFDSDTPQL 672
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K SC  + ISWNP           +G D  +P +
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNI 193          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 53/188 (28.19%), Postives = 83/188 (44.15%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFDSDTPQL 672
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K SC  + ISWNP           +G D  +P +
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNI 193          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 56/197 (28.43%), Postives = 88/197 (44.67%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGF-DSDTPQLNSSXVWEF 696
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K SC  + ISWNP           +G  DS+T       ++E+
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEY 202          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 53/186 (28.49%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFDSDTP 666
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K SC  + ISWNP           +G D  +P
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSP 191          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 53/186 (28.49%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFDSDTP 666
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K SC  + ISWNP           +G D  +P
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSP 191          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 53/186 (28.49%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFDSDTP 666
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K SC  + ISWNP           +G D  +P
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVGSDDSSP 191          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 54/186 (29.03%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFDSDTP 666
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V+VY   D + L  W LQ E       V+     SC    ISWNP           +G D  +P
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE-------VSCKLCCSC----ISWNPSSSRAHPPMIAVGSDDSSP 191          
BLAST of FC932101 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14
Identity = 52/182 (28.57%), Postives = 81/182 (44.51%), Query Frame = 1
Query:  124 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVVCICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYGLLDPLILKNWQLQAEFQNAIDSVTMFRKASCLSASISWNPQKVENQGSSFVLGFD 654
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +     D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++Y   D + L  W LQ E            K +C  + ISWNP           +G D
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLAC--SCISWNPSSSRAHPPMIAVGGD 187          
The following BLAST results are available for this feature:
BLAST of FC932101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SEH1_XENTR1.927e-1528.19Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1B_XENLA1.927e-1528.19Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA1.927e-1528.19Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_OSMMO2.516e-1528.43Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_PONAB3.286e-1528.49Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN3.286e-1528.49Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN3.286e-1528.49Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_MOUSE1.631e-1429.03Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_DANRE3.633e-1428.57Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionC34204F07EF PostHarveN Citrus clementina cDNA clone C34204F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932101 ID=FC932101; Name=FC932101; organism=Citrus clementina; type=EST; length=696bp
GCTCTTGACAAAGCCCTAGTTCACTGCGAGCGTACGGTCTCCTCTCATCT
GAGCTGTTGAAATTCACGGTTCACGGACATGGACAAAGCAGTTGCGACTC
TTGACAAAGGCACAACGTGCTCCTCGTGGAACTACTGTGGCCAGAGATTA
GCCACTGGTTCAACCGACGGCACTCTCTCCATCTTTGACTCACCTGACCC
CTCTTCTTCCTCATTCACCTGCAACCTCAAAACTAAGGTACATGCGGGTG
CCATTTTAAAGGTTGTTTGGGTGCCACCGGAGTTCGGTGACGCGGTTGTC
TGTATTTGCTCGGATGGAAGTTTGTTGTTGTGGGAAGAGATTGTTGAAGA
TGCACAGCCTCTGCAGTGGAAGCTCTGTAAGAGCTTTGAAAGCACTTCGA
CTCAAGTGTTAGATGTTCAATTTGGAGTCTCTTCCACAAGTTTGAAATTG
GTTGCTGCATACTCAGATGGCCATGTTAAAGTTTATGGGCTCCTAGATCC
CTTGATACTTAAAAATTGGCAACTTCAGGCTGAATTTCAGAATGCTATTG
ATTCTGTGACTATGTTTAGGAAGGCTTCATGCTTATCGGCATCCATTTCT
TGGAATCCACAGAAGGTTGAAAACCAGGGATCTAGTTTTGTTCTTGGGTT
CGATTCAGACACACCACAACTCAATTCCTCCNAGGTATGGGAATTT
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