FC932107

Overview
NameFC932107
Unique NameFC932107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD4_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana GN=ARD4 PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 6.365e-90
Identity = 150/187 (80.21%), Postives = 167/187 (89.30%), Query Frame = 1
Query:   52 MVLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKGLTGQAGVPVEAH 612
            M LEAWFMD+S++DQRLPHH NPK+ VSLD LAELGVLYW+LNP+NYEND EL KIRE RGY YMDLLDLCPEKV+NYEEKLKNF+TEHIH DEEIRYCL GSGYFDVRD+ D+WIRIW++ GDLIVLPAGIYHRFTLD SNY+KLMRLFVGEPVWT YNRPQE+HP RK+YI GLT + G  V+AH
Sbjct:    1 MALEAWFMDDSNEDQRLPHHRNPKELVSLDYLAELGVLYWKLNPENYENDSELSKIREDRGYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWMQPGDLIVLPAGIYHRFTLDASNYIKLMRLFVGEPVWTPYNRPQEEHPVRKKYIHGLTYKFGETVKAH 187          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.006e-76
Identity = 123/180 (68.33%), Postives = 153/180 (85.00%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKGLTGQAG 594
            V+EAW+MD+S +DQRLPHH  PK+F+ L +L+ELG+L WRLN  ++ENDE L+KIREARGYSYMD+ D+CPEK+ NYE KLKNF+ EH+H DEEIRYCLEGSGYFDVRD++DQWIR+ +K G +IVLPAG+YHRFTLD+ NY+K MRLFVGEPVWT YNRP +  PARKEY++ +  + G
Sbjct:   12 VIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINRGG 191          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 4.006e-76
Identity = 123/180 (68.33%), Postives = 153/180 (85.00%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKGLTGQAG 594
            V+EAW+MD+S +DQRLPHH  PK+F+ L +L+ELG+L WRLN  ++ENDE L+KIREARGYSYMD+ D+CPEK+ NYE KLKNF+ EH+H DEEIRYCLEGSGYFDVRD++DQWIR+ +K G +IVLPAG+YHRFTLD+ NY+K MRLFVGEPVWT YNRP +  PARKEY++ +  + G
Sbjct:   12 VIEAWYMDDSEEDQRLPHHREPKEFIPLSKLSELGILSWRLNADDWENDENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINRGG 191          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. japonica GN=ARD1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.749e-74
Identity = 121/180 (67.22%), Postives = 151/180 (83.89%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKGLTGQAG 594
            V+EAW+MD+S +DQRLPHH  PK+F+ +D+L ELGV+ WRLNP N+EN E L++IREARGYSY+D+ D+CPEK+ NYE K+K+F+ EH+H DEEIRYCLEGSGYFDVRD++DQWIRI +K G +IVLPAG+YHRFTLDT NY+K MRLFVG+PVWT YNRP +  PARKE++  L    G
Sbjct:   12 VIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEG 191          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. indica GN=ARD1 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.749e-74
Identity = 121/180 (67.22%), Postives = 151/180 (83.89%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKGLTGQAG 594
            V+EAW+MD+S +DQRLPHH  PK+F+ +D+L ELGV+ WRLNP N+EN E L++IREARGYSY+D+ D+CPEK+ NYE K+K+F+ EH+H DEEIRYCLEGSGYFDVRD++DQWIRI +K G +IVLPAG+YHRFTLDT NY+K MRLFVG+PVWT YNRP +  PARKE++  L    G
Sbjct:   12 VIEAWYMDDSEEDQRLPHHREPKEFIHVDKLTELGVISWRLNPDNWENCENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEG 191          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD3_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.395e-74
Identity = 119/172 (69.19%), Postives = 149/172 (86.63%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYI 570
            V++AW+MD+S +DQRLPHH +PK+F+SLD+LAELGVL WRL+  NYE DE+L+KIRE+RGYSYMD  ++CPEK+ NYE K+K+F+ EH+H DEEIRYC+ GSGYFDVRD ++ WIR+W+K G +IVLPAGIYHRFT+D+ NY+K MRLFVGEPVWT YNRP +  PARKEYI
Sbjct:   12 VIQAWYMDDSEEDQRLPHHKDPKEFLSLDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYI 183          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD1_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Arabidopsis thaliana GN=ARD1 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.234e-73
Identity = 120/173 (69.36%), Postives = 147/173 (84.97%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIK 573
            V++AW++D   +DQ+LPHH +PK+FVSLD+LAELGVL WRL+  NYE DEEL++IRE+RGYSYMDL ++CPEK+ NYEEK+K F+ EH+H DEEIRYCL GSGYFDVRD +D WIR+W+K G LIV PAGIYHRFT+D+ NY+K MRLFVG PVWTAYNRP +  PARK Y+K
Sbjct:   12 VIQAWYLDNKEEDQKLPHHKDPKEFVSLDKLAELGVLCWRLDADNYETDEELKRIRESRGYSYMDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAGSGYFDVRDLNDIWIRVWVKKGGLIVFPAGIYHRFTVDSDNYMKAMRLFVGGPVWTAYNRPHDHLPARKAYMK 184          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD2_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Arabidopsis thaliana GN=ARD2 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.687e-72
Identity = 117/172 (68.02%), Postives = 148/172 (86.05%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYI 570
            V++AW+MD+S +DQRLPHH +PK+FVSLD+LAELGVL WRL+  NYE DE+L+KIRE+RGYSYMD  ++CPEK+ NYE K+K+F+ EH+H DEEIRYC+ G+GYFDVRD ++ WIR+ +K G +IVLPAGIYHRFT+D+ NY+K MRLFVGEPVWT YNRP +  PARKEY+
Sbjct:   12 VIQAWYMDDSEEDQRLPHHKDPKEFVSLDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGTGYFDVRDRNEAWIRVLVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYV 183          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: ARD4_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Oryza sativa subsp. japonica GN=ARD4 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.742e-71
Identity = 117/182 (64.29%), Postives = 147/182 (80.77%), Query Frame = 1
Query:   67 WFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKGLTGQAGVPVEAH 612
            W + E+ +++      NP + + L +L E+GVLYW L+PK  E++EEL KIR  RGYSY DL ++CP+K+ NYEEKLK+FY EHIHADEEIRYCLEGSGYFDVRD+ D+WIRIWIK GD+I+LPAGIYHRF +D++NY+KLMRLF+GEPVWTAYNRPQEDHP R+EY+K + G  G  + AH
Sbjct:    6 WMLGENGEEKSFE---NPNELLPLSRLEEIGVLYWHLDPKKSESEEELTKIRRERGYSYFDLTEICPDKLENYEEKLKSFYCEHIHADEEIRYCLEGSGYFDVRDKDDKWIRIWIKEGDMIILPAGIYHRFIVDSNNYIKLMRLFIGEPVWTAYNRPQEDHPVRQEYVKNVKGDTGFALAAH 184          
BLAST of FC932107 vs. ExPASy Swiss-Prot
Match: MTND_CHICK (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Gallus gallus GN=ADI1 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 8.372e-66
Identity = 114/179 (63.69%), Postives = 143/179 (79.89%), Query Frame = 1
Query:   55 VLEAWFMDESSQDQRLPHHLNPKQFVSLDQLAELGVLYWRLNPKNYENDEELQKIREARGYSYMDLLDLCPEKVTNYEEKLKNFYTEHIHADEEIRYCLEGSGYFDVRDESDQWIRIWIKAGDLIVLPAGIYHRFTLDTSNYVKLMRLFVGEPVWTAYNRPQEDHPARKEYIKGLTGQA 591
            ++EAW+MDES +DQR PH L P + VSL+QL  LGV Y RL+  NYE D  L++IREA  YS+MD++ +  +K+ NYEEK+K FY EH+H D+EIRY L+GSGYFDVRD+ D+WIRI ++ GD+I LPAGIYHRFTLD +NYVK MRLFVGEPVWTAYNRP +D PARK+Y+K L  +A
Sbjct:    1 MVEAWYMDESQEDQRAPHRLQPNRAVSLEQLRRLGVAYRRLDADNYETDPRLKEIREAENYSWMDIVTIHKDKLPNYEEKIKTFYEEHLHLDDEIRYILDGSGYFDVRDKDDKWIRISMEKGDMITLPAGIYHRFTLDENNYVKAMRLFVGEPVWTAYNRPADDFPARKQYMKFLAEEA 179          
The following BLAST results are available for this feature:
BLAST of FC932107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ARD4_ARATH6.365e-9080.211,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSJ4.006e-7668.331,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSI4.006e-7668.331,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSJ3.749e-7467.221,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSI3.749e-7467.221,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD3_ARATH6.395e-7469.191,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ARATH9.234e-7369.361,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ARATH2.687e-7268.021,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD4_ORYSJ1.742e-7164.291,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
MTND_CHICK8.372e-6663.691,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]

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Properties
Property NameValue
Genbank descriptionC34204G01EF PostHarveN Citrus clementina cDNA clone C34204G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932107 ID=FC932107; Name=FC932107; organism=Citrus clementina; type=EST; length=778bp
GACCCGCGGCAGTTTCCGAGTTCAGGCTGGAAGAGTGAGTTCTAGTTACC
GATGGTTCTCGAGGCGTGGTTTATGGATGAAAGTAGTCAAGACCAACGGC
TCCCTCACCACCTCAACCCGAAGCAATTCGTATCGTTGGACCAATTGGCA
GAATTGGGAGTGCTGTATTGGCGCTTGAACCCGAAAAACTATGAGAACGA
TGAGGAATTGCAGAAGATCAGAGAAGCAAGAGGTTACAGTTACATGGATT
TGCTTGATTTATGTCCGGAGAAAGTGACTAACTATGAGGAGAAGCTGAAG
AACTTTTACACGGAGCACATCCATGCCGACGAAGAGATACGCTACTGTTT
GGAAGGAAGTGGATATTTTGATGTTAGAGACGAGAGTGATCAGTGGATTC
GAATCTGGATCAAAGCGGGTGATCTAATCGTTCTGCCAGCTGGAATCTAC
CATCGTTTCACTCTTGACACTAGTAACTATGTTAAGTTGATGAGGTTGTT
TGTGGGAGAACCAGTGTGGACGGCATATAATCGGCCACAGGAGGATCATC
CTGCCAGAAAGGAGTACATCAAAGGTTTGACTGGGCAGGCAGGGGTGCCA
GTTGAAGCTCATTAGAGTTTGAGAGTACTTTACCATTTACACTTGTGTAT
GTGTATGTTAAATGTACTATATTTATATAGACTTCTGATAAACCACATTT
AGCTAAACCTNATGTCTATGCATTTGGTGCTTTGATGAGATTTAGTATAC
AGCAGCTTATGCTGGCAATGCATACTAT
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