FC932121

Overview
NameFC932121
Unique NameFC932121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5236 contig Ccv1_Contig5236:28..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932121 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.659e-57
Identity = 116/221 (52.49%), Postives = 143/221 (64.71%), Query Frame = 1
Query:   58 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSIDIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNV 720
            ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP MWR IDMHNLGDL DMD++LE MCRHAVDRS G L+ I I YFGT +LL YIA           + C  I+D GF EA+   P              E+L  VG  C  +++ KLN      P+ E DDDA AIAE M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNV
Sbjct:   15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNV 230          
BLAST of FC932121 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.425e-55
Identity = 109/223 (48.88%), Postives = 143/223 (64.13%), Query Frame = 1
Query:   67 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSIDIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKI-----ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNV 720
            +W +LP+ +TS+IL ++GAI++L +AQ+VC  W R+C DP MWR ID+ N  D     +DLE MCRHAVDRS+G L+ I+I Y+GT++L+ YIA           V C+ I+D+G  +A+   P              E+L  +G  CP L++ KLN    R P+I       DD+AKAIAE+M  LRHLQL GN LTN GL AILDGCPHLE LDLRQCFN+
Sbjct:  180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN----RAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNI 398          

HSP 2 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  571 DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNV 720
            DD+  AIAE M  LRHL+LFGN LTN+ L+AILD C HL  LDLR+CFN+
Sbjct:   19 DDEPLAIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNI 68          
BLAST of FC932121 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.158e-45
Identity = 99/234 (42.31%), Postives = 134/234 (57.26%), Query Frame = 1
Query:   52 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSIDIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRC----------PKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLES-LDLRQCFNV 720
            ++E  +W  LP ++T++IL ++   D+L +A+++C +W RIC DP MWR I   NL D    + D E MCRH VD S G LL I+IE+F +D LL YI                 ++++G    I+  P              + L+A+G  CP L++ KLN+ G             P +ECDDDA AIAE+M  LRHLQL GN LTN GL AILDGCPHLE  LD+R+CFN+
Sbjct:   34 DEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKI---NLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNI 263          
BLAST of FC932121 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 97/223 (43.50%), Postives = 128/223 (57.40%), Query Frame = 1
Query:   67 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMH---NLGDLWDMDHDLEKMCRHAVDRSNGQLLSIDIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEA-LEAVGSLCPLLRSFKLNNRGH-RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNV 720
            +W +LP ++TS+IL ++GAI++L +AQRVC SW R+C DP MWR ID+    NL +  ++ + +E +C  AVD S G LL I+I+Y      L YIA           V C  +  +G  EA    P             +E  L+ VG  CP LR+ KLN  G  +C    CD  A AIAE M GLRHLQLF N L+  GL AIL+GCPHL++L L QC N+
Sbjct:   20 NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNI 238          
BLAST of FC932121 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.676e-41
Identity = 96/233 (41.20%), Postives = 132/233 (56.65%), Query Frame = 1
Query:   28 SRMSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSIDIEY--FGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNV 720
            S++     E++  +W +LP D+ S+IL ++  +++L +A++VC SW R+  DP++WR IDM NL  L+ + + +E  CRH VD S G LL  +I+   F T  LL Y+A           V    I+  G  EAI   P             +E  + +G  CP L++ KL   G      E D+DA AIA+ M GL HLQL  N LTN+GL AILDGCPHLE LDLRQCFN+
Sbjct:   13 SQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLR-VKGGQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLV--GFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNI 241          
BLAST of FC932121 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.383e-40
Identity = 97/238 (40.76%), Postives = 127/238 (53.36%), Query Frame = 1
Query:   55 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSIDI-EYFGTDELLQYIAXXXXXXXXXXXVSCY-NISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPK--------------IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNV 720
            +E  +W  LP ++T++IL ++   D+L +AQ+VC  W RIC DP MWR I   N  D    + D   MCRH VD S G LL I++ E+F +D LL YI              C+  ++  G   AI   P              + L+A+G  CP L++ KLN+ G   P               +ECDDDA AIAE+M  L HLQL  N LTN GL AILDGCPHLE LD+R+CF +
Sbjct:   41 KERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKI---NTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRNLRSLGLGM--CFPRVTKLGVVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRI 272          
BLAST of FC932121 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.191e-15
Identity = 67/247 (27.13%), Postives = 106/247 (42.91%), Query Frame = 1
Query:   52 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGD-------LW--DMDHDLEKMCRHAVDRSNGQLLSIDIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCE-AIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLN----NRGH----------RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNV 720
            E++  DW  L  ++   I+S++   ++ T    V  SWL +C DP +W   D+    D       LW  + +  ++ M R  VD S G L  I + +  +D  L Y A            S  N++D    + A +                 + L  +G  CP LR  K N    +  H           CP+ + D +A AI ++M  L HL++  + L+  GL +I +GCP LE LDL  C ++
Sbjct:    2 EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQ-DGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCVHL 246          
The following BLAST results are available for this feature:
BLAST of FC932121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SKI19_ARATH3.659e-5752.49F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH3.425e-5548.88Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
FB221_ARATH7.158e-4542.31Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
FBL9_ARATH1.143e-4243.50Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
FBL22_ARATH3.676e-4141.20Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
FBL21_ARATH2.383e-4040.76Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
SKIP1_ARATH1.191e-1527.13F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
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Properties
Property NameValue
Genbank descriptionC34204H04EF PostHarveN Citrus clementina cDNA clone C34204H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932121 ID=FC932121; Name=FC932121; organism=Citrus clementina; type=EST; length=722bp
GATGTTTTCAGGATAGGATGCAACATTAGCAGAATGAGCACAGGCACGGC
GGAGCAAGAATCATGCGACTGGACGCAGTTGCCGGCGGACGTGACGTCAA
CGATTCTATCAAAAATCGGCGCCATCGATGTGCTGACGAGCGCGCAGCGT
GTGTGCTCTTCTTGGCTGAGGATCTGCCACGATCCCGTCATGTGGCGGAA
CATCGACATGCACAACTTAGGAGATTTGTGGGACATGGACCATGACTTGG
AGAAGATGTGCCGCCACGCTGTTGACCGTAGCAACGGCCAATTGCTCTCC
ATCGATATCGAGTACTTCGGTACCGATGAGCTTCTCCAATACATCGCTAA
TAGGTCAAGGAATCTCAGGAATCTCAGACTTGTGTCATGTTATAACATTT
CAGACCAAGGATTTTGTGAAGCTATTAAAGGGTTTCCACTGCTCGAGGAG
CTTGAACTTTCATACTGCTCATTATCACAAGAAGCATTGGAAGCTGTTGG
GAGCCTTTGCCCACTTCTGAGATCATTTAAATTGAACAACCGGGGTCACA
GGTGCCCAAAAATAGAGTGTGATGATGATGCGAAAGCTATAGCAGAAAAC
ATGCATGGATTGCGTCATCTCCAGTTATTTGGAAATGAGCTGACAAATGT
GGGGTTGCAGGCTATTCTTGATGGCTGTCCTCACCTTGAATCACTTGACC
TGCGCCAGTGTTTCAATGTCAT
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